Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0056
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.74 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.1  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -1

Query: 262 KSYNLFEDYRFVTETKTYNYHYS*NTHNKS*TWACVHVPMFTITHLTQSPKNKSLK*HNR 83
           +SY+ ++    V      N+ Y  + +  +   A     MF   HL ++PKN S   +  
Sbjct: 114 QSYDKYDLLENVNNAARINWEYL-DKYKPTPLGAVATEKMFVARHLAETPKNTSAVRYTH 172

Query: 82  VIKT 71
            I T
Sbjct: 173 YIGT 176


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +3

Query: 270 FCYEYYILTYKYAVMLFGCENCFNS 344
           F Y +Y   ++ A     C  CF S
Sbjct: 357 FIYAFYSADFRLAFWRLTCRKCFKS 381


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 244  EDYRFVTETKTYNYHYS*NTH 182
            E  R  TE  T+ YH++ N H
Sbjct: 1666 ESGRLDTEMSTWGYHHNVNKH 1686


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +1

Query: 277 MNIIF*PINMQLCYLGVKT 333
           MN+ + P++ QLC++ +++
Sbjct: 140 MNLQYFPMDRQLCHIEIES 158


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +1

Query: 277 MNIIF*PINMQLCYLGVKT 333
           MN+ + P++ QLC++ +++
Sbjct: 140 MNLQYFPMDRQLCHIEIES 158


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +1

Query: 277 MNIIF*PINMQLCYLGVKT 333
           MN+ + P++ QLC++ +++
Sbjct: 79  MNLQYFPMDRQLCHIEIES 97


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 412 FHIKTVFSSSRGGPVP 459
           FH K V S  RGG +P
Sbjct: 142 FHEKLVESFPRGGSLP 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,407
Number of Sequences: 438
Number of extensions: 2846
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)