Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0054
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    32   0.075
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    29   0.70 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    29   0.92 
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.1  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   2.1  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   2.8  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.7  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.9  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   6.5  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   6.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.6  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 277 TCPVWSRKQRIV*NFGCYLKALNKLPIDKV 366
           +CP+W     +  N GC +K+LN++ I KV
Sbjct: 67  SCPLWENDNAMCSNQGCAVKSLNEIEIPKV 96


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 501 KEDYLHFTDFVLPNKIYKDKLPHLHSVYKKYSDLNQMYDSKDVN 632
           +EDYL + D  LP      KL HL  V+K+Y+ + ++ +  +++
Sbjct: 197 EEDYLQWKDDTLPEI---GKLFHLQEVHKEYNPMFEVIEKPEIS 237


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKLYKVLTMCVEGHILDTDLSGVEQE 299
           HT+N+KL DD+  E  +  T  +    LA  C +  + ++     +  ++D D   ++ E
Sbjct: 404 HTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIRE---KMDMIDLDEDEIDAE 460

Query: 300 AKDCI 314
             D +
Sbjct: 461 VLDSL 465


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 84  RDDLYQIISRLAHTQNLKLVDDIFTESCSTITKQHFYVQLAK 209
           R  + Q+    +  +N+ ++ D     CS I +Q ++VQLA+
Sbjct: 530 RKPVVQVEHAASKLENVHILCDYCKHKCSNIMEQDWFVQLAR 571


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 462 LLEDSTKLFDIFSKEDYLHFTDFVLPNKIYKDKLPHLHSVYKKYSDLNQM 611
           L+E      D+F++ D   F DF++  + Y   L H   + K+Y+ L+++
Sbjct: 613 LMEYGDLKLDVFAEFDRKRFFDFLVNTQCY--SLDHAAQICKQYNYLDEL 660


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = +3

Query: 288  VEQEAKDCIELWLLFKSIEQTSDRQSHVLPVYKTCEQIAKDNIHDYITANPHLVLGMILL 467
            ++ E++ C+   L    +  T+  Q H   V K      +  ++ ++   P +V  ++LL
Sbjct: 811  IDLESQGCLLTVLSNYGLLLTAYTQGHKNLVNKMEYAHIQIGVYPFL---PEIVRALLLL 867

Query: 468  EDSTKLFDIFSKEDYLHFTDFVL 536
            +   +  D+     +LH+ +FVL
Sbjct: 868  DKREQAIDLVKTYGHLHYINFVL 890


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 243 TMCVEGHILDTDLSGVEQEAKDCIELWLLFKSIEQ 347
           T+ V   +  TDL+   QE+  CI++W+   ++++
Sbjct: 105 TLIVWQELNGTDLALSFQESSGCIDMWMFLANVQK 139


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
 Frame = +3

Query: 261 HILDTDLSGVEQEAKDCIELWLLFKSIEQT--SDRQSHVLPVYKTCEQIAKDNIHDYITA 434
           H+L     GVE E K   E W   K + Q   S R+  VL V  T        I + I A
Sbjct: 91  HVLAATGDGVEVEEKRAWEGWWNEKIVSQARESIRRPDVLAVLLTGRNEGFRGIVEKIIA 150

Query: 435 NPHLVLGMILLE--------DSTKLFDI-FSKEDYLHFTDFVLPNKIYKDKLPHLHS 578
           +  L    ++ +          T  F + F  E Y HF  ++   +IY+D+  H+ +
Sbjct: 151 SKGLDFQGVVFKLQAPDGFWPQTLNFKLWFFNEVYRHFL-YINSTRIYEDRPSHIEA 206


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 679 IFETSNPLYPDSRWYTFTSFESYI*FKSEY 590
           I +T NP +  S  Y F   E+Y    SEY
Sbjct: 375 ITKTKNPKWSKSHEYHFKDLENYFKLPSEY 404


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
 Frame = +3

Query: 423 YITANPHLVLGMILLEDSTKLFDIFSKEDYL-------------HFTDFVLPNKIYKDKL 563
           Y  +  HL  G +LLEDS+      S  +YL             HF+ F   +    D +
Sbjct: 198 YCPSGTHLHEGSLLLEDSSARHSSDSVHEYLVKKPSNCDCECHAHFSSFPTHSGT-PDDI 256

Query: 564 PHLHSVY 584
            H+HSVY
Sbjct: 257 EHIHSVY 263


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 114  LAHTQNLKLVDDIFTESCSTITKQHFYVQLAK 209
            L+   NLK++D    E    I   HFY +L K
Sbjct: 1029 LSFVSNLKIIDKKNNEPDENILPLHFYGELVK 1060


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,426
Number of Sequences: 5004
Number of extensions: 74439
Number of successful extensions: 235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)