Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0054
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072... 37 0.015
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 36 0.026
07_01_0877 - 7276300-7276967,7277050-7277173 36 0.034
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 29 2.9
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 29 2.9
01_06_0537 + 30073020-30074471,30074957-30074980 28 6.8
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 28 9.0
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 28 9.0
>02_04_0307 -
21905897-21906490,21906581-21906722,21907116-21907247,
21907303-21907433,21908028-21908185,21908299-21908396,
21908511-21908631,21908748-21908965,21909230-21909429
Length = 597
Score = 37.1 bits (82), Expect = 0.015
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Frame = +3
Query: 21 AYTKMCIYDTLCSYGIVND--DERDDLYQIISRL-AHTQNLKLVDDIFTESCSTITKQHF 191
AY+++C+ DTL GI E D+ + RL H + ++D + + H
Sbjct: 148 AYSQLCMVDTLERMGISESFACEISDILDMTYRLWMHNEEELMLDMRTCAMAFRLLRMHG 207
Query: 192 YVQLAKYCVKNKLYKVLTMCVEGHILDTD--LSGVEQEAKDCIELWLLFKSIEQTSDRQS 365
Y + + + G++ DT L + C+E L+ + I S R
Sbjct: 208 YDITSDGMAQFVEQSSFDDSIHGYLNDTKALLELYKSSQLRCLEDDLILEEIGSWSARVE 267
Query: 366 HVL--PVYKTCEQI-AKDNIHDYITANPHLVLGMILLEDSTKLFDIFSKEDYLHFTDFVL 536
+ L PVY E++ K NI + T + G LL+ + ++E + + V+
Sbjct: 268 YALKCPVYAILERLEQKRNIEQFKTKEQLKIEGFKLLKSG---YRCLNREPIITWISGVI 324
Query: 537 PN----KIYKDKLPHLHSVY-KKYSDLNQMYDSKDV 629
PN + D+ SVY ++ DLN+ D ++
Sbjct: 325 PNDEILALAVDEFHSSQSVYQQELQDLNRWDDHGEI 360
>03_06_0030 +
31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 417 HDYITANPHLVLGMILLEDSTKLFDIFSKEDYLHFTDFVLPNK-IYKDKLPHLHSVYKKY 593
HD +N H+ G + TK + +S+ D T +L ++ I++ ++ LH VYK
Sbjct: 71 HDEKMSNGHMCNGFM-----TKPANGYSEYDKEMLTRTMLEHEAIFRQQVYELHRVYKIQ 125
Query: 594 SDLNQMYDSKDVNVYHLL 647
DL + Y +KD+ Y +L
Sbjct: 126 RDLMKQYQNKDIYAYPML 143
>07_01_0877 - 7276300-7276967,7277050-7277173
Length = 263
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +3
Query: 543 KIYKDKLPHLHSVYKKYSDLNQM-YDSKD-VNVYHLLSGYRGLDVSKIFEFQLINQTTNN 716
K+ K + S+ ++Y D+ ++ YD +D ++ + + +G G V+K+F F+ + TNN
Sbjct: 24 KLQKGVKKEIESLQEEYVDVRELSYDIEDSIDTFMVSAGKDGHPVAKLFSFKGMIDRTNN 83
Query: 717 LF 722
LF
Sbjct: 84 LF 85
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 384 KTCEQIAKDNIHDYITANPHLVLGMILLEDSTKLFDIFSKEDYLHFTDFVLPNKIYKDKL 563
K EQ N D +T NP + +G ++ K ++ S+ Y F +++P + +
Sbjct: 388 KGVEQYGNGNWKDILTNNPDVFIGRKAMDLKDKWRNMMSENLYPAFAVYIIPTVVINHQC 447
Query: 564 PHLH 575
+H
Sbjct: 448 SLVH 451
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 507 DYLHFTDFVLPNKIYKDKLPHLHSVYKKYSDLNQMY--DSKDV-NVYH 641
D++ +FV NKI K++ H VYK + D+ MY D+K + +VYH
Sbjct: 271 DFVEAINFV--NKI-KNRFQHDEHVYKAFLDILNMYRKDNKSIQDVYH 315
>01_06_0537 + 30073020-30074471,30074957-30074980
Length = 491
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +3
Query: 192 YVQLAKYCVKNKLYKVLTMCVEGHILDTDLSGVEQEAKDCIELWLLFKSIEQTSDRQSHV 371
+ L ++C+ + +K+L+ +E L L ++ D E +L S + S +
Sbjct: 106 FCPLKRFCISTRTWKILSQVLEKKELQEMLDHLQGIVSDMQEFVVLMSSYPRMSRQPYGS 165
Query: 372 LPVYKTC---EQIAKDNIHDYITANPHLVLG 455
+ + C QI K+ I +++ PH G
Sbjct: 166 YLLLENCMFGRQIEKERIINFL-LEPHRPAG 195
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 57 SYGIVNDDERDDLYQIISRLAHTQNLKLVDDIFTESC 167
++GI D+ DD Y + + TQ+L+ D+ F C
Sbjct: 230 NFGINRSDDEDDDYAVFHSDSKTQHLQNSDEYFKTVC 266
>06_02_0107 - 11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 546 IYKDKLPHLHSVYKKYSDLNQMYDSKDVNVYHLLSGYRGLDVSKIFEFQLINQ 704
+ KDK HL ++++ DLN+ S + + S D SKI +L N+
Sbjct: 876 VIKDKDRHLQNLFQAVGDLNECLQSISITITDTRSETTSKD-SKILSDELYNR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,228
Number of Sequences: 37544
Number of extensions: 401090
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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