Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0054
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL033514-5|CAA22082.1|  773|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z70212-3|CAA94161.1|  226|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p...    28   8.0  
AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical...    28   8.0  
AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormo...    28   8.0  

>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 165 CSTITKQHFYVQLAKYCVKNKLYKVLTMCVEGHILDTDLSGVEQEAKDCIE 317
           C   ++  F +  + YC  NK+   +T CV G  L   +S   +   +C+E
Sbjct: 385 CQDGSEPEFSLHGSSYCWSNKVCPAMTECVAG--LCCSISKTRKRQSECLE 433


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 165 CSTITKQHFYVQLAKYCVKNKLYKVLTMCVEGHILDTDLSGVEQEAKDCIE 317
           C   ++  F +  + YC  NK+   +T CV G  L   +S   +   +C+E
Sbjct: 385 CQDGSEPEFSLHGSSYCWSNKVCPAMTECVAG--LCCSISKTRKRQSECLE 433


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 564  PHLHSVYKK-YSDLNQMYDSKDVNVYHLL 647
            PHL SV  +    +N+    +D+NVYHLL
Sbjct: 1520 PHLQSVLNQAIGRINRFGQKRDMNVYHLL 1548


>AL033514-5|CAA22082.1|  773|Caenorhabditis elegans Hypothetical
           protein Y75B8A.4 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +3

Query: 198 QLAKYCVKNKLYKV----LTMCVEGHILDTDLSGVEQEAKDCIELWLLFKSIEQTSDRQS 365
           QL K+C+ +   K+    +   +E + ++  +  +E+          L  +    SD  +
Sbjct: 491 QLTKHCISHDYVKLERQAIVAMIEEYTMEAGVRQLERNVGAICRNVALRLAEALNSDPGA 550

Query: 366 HVLPVYKTCEQIAKDNIHDYITANPHL 446
            VLPV +   QI+  NIH  I  N H+
Sbjct: 551 DVLPVMELPIQISASNIHK-ILKNKHM 576


>AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical
           protein C27A12.6 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 276 DLSGVEQEAKDCIELWLLFKSIEQTSDRQSHVLPVYKTCEQIAKD-NIHDYITANPHLV 449
           +LSG+    + C E W  + + +  SD QS +  +   C+ + +D  +  YI ++P +V
Sbjct: 134 ELSGLSCNHRACAECWQAYLTNKIVSDAQSEIECMAPNCKLLIEDEKVLSYI-SDPTMV 191


>AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical
           protein Y50D7A.4 protein.
          Length = 852

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
 Frame = +3

Query: 243 TMCVEGHILDTDLSGVEQEAKDCIE-----------LWLLFKSIEQTSDRQSHVLPVYKT 389
           T+ ++G IL+    G  QEA+DC+             W +F  I++T  +    +  YK 
Sbjct: 55  TLAMKGLILNC--MGKLQEAQDCVRRGLVSDLRSYVCWHVFGLIQKTEKKYDEAIKAYKR 112

Query: 390 CEQIAKDNI 416
              + KDN+
Sbjct: 113 ALMLEKDNL 121


>Z70212-3|CAA94161.1|  226|Caenorhabditis elegans Hypothetical
           protein R04D3.4 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +3

Query: 351 SDRQSHVLPVYKTCEQIAKDNIHDYITANPHLVLGMILLEDSTKLFDIFSKEDYLHFTDF 530
           S R +  +P+  T E++A+ +     +      LG + +++  K       +D+      
Sbjct: 52  SHRATFTIPL--TAEEVARLDFERSASKQEPRALGKVAVDEKNKCSTFEKHDDWSKDKKV 109

Query: 531 VLPNKIYKDKLPHLHS--VYKKYSDLNQMYDSKDV 629
           ++P K     +PH+       K S L++M D+  +
Sbjct: 110 LMPEKAMPMAMPHVSRKVAVDKRSVLSEMADASSI 144


>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
           protein R107.6 protein.
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 72  NDDERDDLYQIISRLAHTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKL 230
           N D RD  Y+++    H Q++   D +  E+C   T      Q+  + V   L
Sbjct: 670 NPDYRDWAYKVLQSHGHDQHVPQQDAVSEEACVRATISTTAAQIEDFVVSRNL 722


>AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical
           protein Y39A1A.13 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 441 HLV-LGMILLEDSTKLFDIFSKEDYLHFTDFVLPNKIYKDKLPHLHS 578
           HLV +G++  ++ST + +   ++ +LH  D ++ + I K +LP + S
Sbjct: 333 HLVKMGILKADESTNVTNTSFRKVWLHINDKIVEDSISKLQLPRVVS 379


>AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 133 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 360 QSHVLPVYKTCEQIAKDNIHDYITANPHLV 449
           Q HVL   +   QI  DN+H+Y T    LV
Sbjct: 328 QGHVLEATEKILQIQSDNMHEYYTKKLKLV 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,064,030
Number of Sequences: 27780
Number of extensions: 405971
Number of successful extensions: 981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)