Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0054
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69610.1 68414.m08006 expressed protein 29 3.2
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 28 7.5
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 28 7.5
At3g49440.1 68416.m05404 F-box family protein-related contains w... 28 7.5
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 27 9.9
At4g25280.1 68417.m03636 adenylate kinase family protein contain... 27 9.9
At4g23990.1 68417.m03448 cellulose synthase family protein simil... 27 9.9
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 27 9.9
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 27 9.9
>At1g69610.1 68414.m08006 expressed protein
Length = 636
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 549 YKDKLPHLHSVYKKYSDLNQMYDSKDVNVYHLLSGYRGLDVSK 677
+KD++ +H VYK Y+ + D D H +S + D SK
Sbjct: 308 HKDRIAEIHKVYKNYAVKMRKLDVIDSQTMHSISLLKLKDSSK 350
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 276 PCLKCGLP-HT*-SILYTVYSSHNTLPTVHKN 187
PC C +P HT S + V + H LPT H+N
Sbjct: 101 PCFLCKMPGHTTMSCPHRVVTDHGILPTSHRN 132
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 372 LPVYKTCEQIAKDNIHDYITANPHLVL 452
+PVY E KDN+ ++T N H+ L
Sbjct: 853 IPVYDNREIKPKDNVEQHLTRNDHIPL 879
>At3g49440.1 68416.m05404 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain
Length = 200
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 267 LDTDLSGVEQEAKDCIELWLLFKSIEQTSDRQSHVLPVYKT 389
L TDL G+ A CIE W+L +E+ + ++ P++++
Sbjct: 82 LITDLDGMFSRATTCIEFWVL-DDVEEHKWWRHYIPPLWES 121
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKL 230
HT+N+KL +D+ E S T + LA C + L
Sbjct: 387 HTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAAL 423
>At4g25280.1 68417.m03636 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 249
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 336 SIEQTSDRQSHVLPVYKTCEQIAKDNIHDYITANPHLVLGMILLEDST 479
++ D HVLP++ + EQ+ K++ H NP LG L+E+S+
Sbjct: 207 AVGTVDDIFQHVLPIFNSFEQL-KESSH----VNPQSHLGSSLVENSS 249
>At4g23990.1 68417.m03448 cellulose synthase family protein similar
to cellulose synthase catalytic subunit from Arabidopsis
thaliana [gi:5230423], cellulose synthase-5 from Zea
mays [gi:9622882]
Length = 732
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 369 VLPVYKTCEQIAK--DNIHDYITANPHLVLGMILLEDSTKLF 488
+ V+ TC IA ++H +TAN L+ ++LL D F
Sbjct: 28 IYAVFHTCGIIALMYHHVHSLLTANTTLITSLLLLSDIVLAF 69
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKL 230
HT+N+KL +D+ E S T + LA C + L
Sbjct: 388 HTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAAL 424
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKL 230
HT+N+KL +D+ E S T + LA C + L
Sbjct: 387 HTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAAL 423
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,681
Number of Sequences: 28952
Number of extensions: 359446
Number of successful extensions: 872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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