Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0053
         (418 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   3.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   4.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   8.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   8.4  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 350 IDLCVRCYPRGGARYPIR 403
           +DLCVR  P     YP R
Sbjct: 15  LDLCVRKRPHSPEPYPPR 32


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 352 NVLERGLFC 326
           N +ERGLFC
Sbjct: 128 NCIERGLFC 136


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 80  RNQLRPQSPTSGA 118
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 80  RNQLRPQSPTSGA 118
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 248 ELLFELTDKPDL 213
           ELL  L+DKP+L
Sbjct: 428 ELLHALSDKPEL 439


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 91  PTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 192
           P +  +FG+FT +  K       +  SS+  C N
Sbjct: 11  PAAGFHFGAFTCEGCKSFFGRTYNNISSISECKN 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,613
Number of Sequences: 336
Number of extensions: 1767
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)