Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0053
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   132   2e-32
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   1.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   4.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    24   8.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  132 bits (319), Expect = 2e-32
 Identities = 66/126 (52%), Positives = 93/126 (73%), Gaps = 2/126 (1%)
 Frame = +3

Query: 9   KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 182
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 363 YDAILE 380
           ++AILE
Sbjct: 124 HNAILE 129


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 301 LGLGRILRSPTKTTCLPLNFFSSSRTS 221
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 171 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 263
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 347 P*AWPLLFVSNTSFVAGLRQDLTVSN 270
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 260 MFTTELLFELTDKPDLNLL 204
           +F +E+ F++  KP LNLL
Sbjct: 436 LFLSEMAFDILVKPQLNLL 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,739
Number of Sequences: 5004
Number of extensions: 32210
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)