Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0053
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 120 3e-28
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 120 3e-28
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 115 1e-26
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 109 7e-25
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 109 7e-25
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 29 0.95
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 28 2.2
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 28 2.2
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 28 2.9
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 2.9
At5g40640.1 68418.m04933 expressed protein 27 5.1
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 5.1
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 5.1
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 6.7
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 26 8.9
At1g48880.1 68414.m05476 hypothetical protein 26 8.9
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 120 bits (290), Expect = 3e-28
Identities = 63/126 (50%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
Frame = +3
Query: 9 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 182
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 363 YDAILE 380
++A+LE
Sbjct: 123 HEAMLE 128
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 120 bits (290), Expect = 3e-28
Identities = 63/126 (50%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
Frame = +3
Query: 9 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 182
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 363 YDAILE 380
++A+LE
Sbjct: 123 HEAMLE 128
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 115 bits (276), Expect = 1e-26
Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 2/126 (1%)
Frame = +3
Query: 9 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 182
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 363 YDAILE 380
++A+LE
Sbjct: 123 HEAMLE 128
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 109 bits (262), Expect = 7e-25
Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Frame = +3
Query: 9 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 182
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 363 YDAILE 380
++AIL+
Sbjct: 123 HEAILD 128
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 109 bits (262), Expect = 7e-25
Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Frame = +3
Query: 9 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 182
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 363 YDAILE 380
++AIL+
Sbjct: 123 HEAILD 128
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 29.5 bits (63), Expect = 0.95
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = -1
Query: 400 NWVPGPPSRIASYTEVNVLERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTS 221
NW PSR+A V L +F L+ +LW R +P K L L +S
Sbjct: 1549 NWSTSNPSRVAELASVVGLYVAVFILV---MLWGKRVRKYENPFKQYGLDL---KASNKE 1602
Query: 220 LI*IF*KAFSLGIGT*MMIDFL 155
I F KAF+ GI ++I F+
Sbjct: 1603 KIQEFLKAFAGGITVVLLIQFI 1624
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 323 QTKEATLKDIDLCVRCYPRG 382
Q +E++LK CVRCYP G
Sbjct: 179 QRRESSLKYQTRCVRCYPNG 198
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 323 QTKEATLKDIDLCVRCYPRG 382
Q +E++LK CVRCYP G
Sbjct: 178 QRRESSLKYQTRCVRCYPNG 197
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 344 KDIDLCVRCYPRGGARYPI 400
K++ LC RC+P G R+P+
Sbjct: 195 KELALCWRCFPSGWFRFPL 213
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 144 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 293
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 201 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 368
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 27.1 bits (57), Expect = 5.1
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +3
Query: 6 TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIY 176
T +KA SF+ I + +EL T+ DL+ E EI EL K +
Sbjct: 554 TSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTS 613
Query: 177 VPMPKLKAFQKIQIRLVRELEKKFSG 254
V + KA ++ L K +G
Sbjct: 614 VAQGEKKAVHDAKVELAAAYSKLLAG 639
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 76 NSKPTPTSKPNFGSF 120
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 57 ISQALVELETNSDLKA-QLRELYITKAKEIE 146
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 76 NSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSS 174
N KP PTS+ N+G F + K N +S++
Sbjct: 317 NQKPGPTSERNYGLFYPNEGKVYNVPFTKKSTT 349
>At1g48880.1 68414.m05476 hypothetical protein
Length = 485
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 225 VRELEKKFSGKHVVFVGD 278
VR++ K+ GK +VFVGD
Sbjct: 172 VRDVLKRLRGKRIVFVGD 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,658
Number of Sequences: 28952
Number of extensions: 176470
Number of successful extensions: 549
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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