Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0052
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 172 PFFYL*STHGHNWFLVDEKI*PVPLITAL 86
           PFF   +     W +  E I P+PL+  L
Sbjct: 428 PFFTFCNVLMEMWNIPRENIDPIPLVVVL 456


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 HRLRTSYVRVLITNKKMASAGAVLLEARPFRPF 219
           H L T Y ++   N+K     +V+ E +  + F
Sbjct: 93  HLLETQYAKIRTENQKKIFDESVIFERKVMKNF 125


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +2

Query: 404 RRPKMPSFWQKHCAPVPRSTCSQPP 478
           +RP  P  +   C P+   +C   P
Sbjct: 21  KRPHSPEPYPPRCPPIYEPSCQYSP 45


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 205 AEPPGVRHQRSPFFYL*STHGHN 137
           A P   +H+ + F +  + HGHN
Sbjct: 272 ASPLAYQHEYNSFNWTANGHGHN 294


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 RNNLSNFIYWCHKALCILKCLLF 567
           + NL    Y+ +  + + KCLLF
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLF 310


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 RNNLSNFIYWCHKALCILKCLLF 567
           + NL    Y+ +  + + KCLLF
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLF 310


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 RNNLSNFIYWCHKALCILKCLLF 567
           + NL    Y+ +  + + KCLLF
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLF 310


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 RNNLSNFIYWCHKALCILKCLLF 567
           + NL    Y+ +  + + KCLLF
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLF 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,043
Number of Sequences: 336
Number of extensions: 2737
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)