Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0052
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0603 - 18895998-18896392,18896491-18896617                       32   0.41 
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    30   1.2  
11_01_0734 - 6078023-6078203,6078645-6078866,6079323-6079390,607...    28   5.0  
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           28   5.0  
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402...    28   5.0  
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240...    27   8.7  

>09_04_0603 - 18895998-18896392,18896491-18896617
          Length = 173

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 274 TVLYPELRITADNFLDRLDTGVALCRHANAVRDSAKLILDAPQPEAEDAIILAKALRSRP 453
           T L P + +  D    R+ T +  C    A   S K     P P  +DA++   A+   P
Sbjct: 29  TPLLPRVHLAGDG-TGRMATTIGFCPRLRAAPPSCKKAEADPAPSLQDAVVAVDAVLRAP 87

Query: 454 P 456
           P
Sbjct: 88  P 88


>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 291 FGVQHRQPFSQVLLHSVEVLLRRFERPEGPSLQEYGTSARHFFICDQHTDITG 133
           FG+ HR+  +QV   +    LR F+  E PS     TS+      +   ++TG
Sbjct: 182 FGMSHREALAQVTAQASHSPLRMFDHTEQPSFSAAPTSSEAMQHMNAAVNMTG 234


>11_01_0734 -
           6078023-6078203,6078645-6078866,6079323-6079390,
           6079919-6079981,6095129-6095782
          Length = 395

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = -1

Query: 417 IFGLRLWSVEDQLSGVPHGVRVPAQS-DARVESVEEVISGDPEFGVQHRQPFSQVLLHSV 241
           + G+ +W+    LS +   + V A++ +A   ++  V+    E   +H + ++ ++LH +
Sbjct: 254 LHGIIIWA--RCLSSLSSSIHVNARNVEAMYTAITMVVQ---EMHARHVKHYNFLMLHGL 308

Query: 240 EVLLRRFERPEGPS--LQEYGTSARHFFICDQHT 145
            +  R F  P  PS  +  +G     F +C  HT
Sbjct: 309 IIWARAFLPPGLPSSGIAHHGARHSSFRLCRSHT 342


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 165 KNGERWCRTPG-GSALQAVQIV*GVPLRYEGGPG 263
           KNGE+W  T G G+   AV +   VP R +G  G
Sbjct: 363 KNGEKWTETVGIGTGSPAVVVSAFVPFRVDGDFG 396


>04_03_1004 +
           21637910-21638269,21638424-21638579,21640108-21640202,
           21640478-21640505,21640725-21640752,21642353-21642363
          Length = 225

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 151 LITNKKMASAGAVLLEARPFRPFKSSEEYLYAMKED----LAEWLTVLYPELRITADNFL 318
           L+T ++ ASA ++LL A P  P  S +  + + KED      E    L  EL +  + + 
Sbjct: 45  LLTTRRAASAASLLLAALPPFPASSPQLPVASAKEDDEAEAREGEGELELELELELERYT 104

Query: 319 DRLDTGVALCR 351
           DR D G  L +
Sbjct: 105 DR-DEGFTLLK 114


>05_03_0242 +
           10823312-10823342,10823662-10823732,10824010-10824021,
           10827329-10827394,10827564-10827766,10827977-10828266,
           10828377-10828468,10829876-10830344,10830670-10830978,
           10831290-10831364,10831457-10831614
          Length = 591

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 107 GPVDHSTIR*ITTALYRNCYTKLSIVDRRS 18
           GPV H+ +R  T   Y +C+ KL   + RS
Sbjct: 346 GPVWHAAVRVFTYPHYCSCFMKLPTAEARS 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,480
Number of Sequences: 37544
Number of extensions: 365710
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)