Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0052
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 76 3e-14
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 73 1e-13
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 54 7e-08
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 31 0.72
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.72
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_24356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_37136| Best HMM Match : PI3Ka (HMM E-Value=1.7) 27 8.9
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 75.8 bits (178), Expect = 3e-14
Identities = 44/125 (35%), Positives = 65/125 (52%)
Frame = +1
Query: 229 EEYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVRDSAKLILDAPQPE 408
E++L +KEDLA W++ L E + D F LDTGV LCR AN ++ +
Sbjct: 22 EKWLIPLKEDLASWISRLLGEEELNTDTFTSMLDTGVVLCRLANFIQTVGEEFFVRNPKF 81
Query: 409 AEDAIILAKALRSRPPVNMLPAAKAGTFFTRNNLSNFIYWCHKALCILKCLLFKTDDLCL 588
+ A + + A G+F R+N+SNFI WC + L + ++F+T+DL L
Sbjct: 82 PRRGLFPACGVTYKQ-----RGATHGSFVARDNVSNFIRWC-RELRVPDVIMFETEDLVL 135
Query: 589 KKNEK 603
KNEK
Sbjct: 136 NKNEK 140
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 73.3 bits (172), Expect = 1e-13
Identities = 46/124 (37%), Positives = 72/124 (58%)
Frame = +1
Query: 232 EYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVRDSAKLILDAPQPEA 411
E L +KEDLAEWL+ + E+ + ADNF+D LD GV LC+ A ++ +A + + +
Sbjct: 32 EDLNPLKEDLAEWLSRVL-EVEVQADNFMDYLDNGVLLCKLAQLIQKAATEWIKLDKAMS 90
Query: 412 EDAIILAKALRSRPPVNMLPAAKAGTFFTRNNLSNFIYWCHKALCILKCLLFKTDDLCLK 591
+ +L SR N AK+GTFF R+N + F+ WC K + I ++F++D L L+
Sbjct: 91 ----VTLPSLGSRFHQN----AKSGTFFARDNAAYFLKWC-KGVGIQDSVMFESDGLVLQ 141
Query: 592 KNEK 603
K +
Sbjct: 142 KQPR 145
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 54.4 bits (125), Expect = 7e-08
Identities = 36/127 (28%), Positives = 63/127 (49%)
Frame = +1
Query: 208 FRPFKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVRDSAKLI 387
F+ ++ E LYAM ED WL L+ E+ IT D F L+ G LC+ AN +++ A
Sbjct: 658 FQRWEKENELLYAMIEDETAWLAKLFTEIIITPDFFFYALEDGTLLCKLANYIQEMAD-- 715
Query: 388 LDAPQPEAEDAIILAKALRSRPPVNMLPAAKAGTFFTRNNLSNFIYWCHKALCILKCLLF 567
+ + + K ++ + +K F +R N+ F+ WC + I + +LF
Sbjct: 716 ---TYGQKHNTHVPGKKIKFKESKRGHRESK--LFHSRENVQKFLTWC-RWHDIPEAILF 769
Query: 568 KTDDLCL 588
+++D+ L
Sbjct: 770 ESNDVVL 776
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 301 TADNFLDRLDTGVALCRHANAVRDSA 378
TAD+F + L +GV LC+ ANA++ A
Sbjct: 86 TADDFQNTLKSGVVLCKLANAIQPGA 111
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 447 GAQCFCQNDGIFGLRLWSVEDQLSGVPHGVRVPAQSDARVESVEEVIS 304
G+Q Q+ G+ GL L L +GVR+ + + + SVE +IS
Sbjct: 922 GSQLLNQDPGVSGLLLTCAIQCLDSTQYGVRMATEVECLMTSVERIIS 969
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 463 MLPAAKAGTFFTRNNLSNFIYWCHKALCIL 552
+ P +AGTF++RN ++N + W + L +L
Sbjct: 1026 VFPFIEAGTFYSRNQVANLMVWVLQRLPVL 1055
>SB_24356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.3 bits (60), Expect = 5.1
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Frame = +1
Query: 250 KEDLAEWLTVLY-----PELRITADNFLDRLDTGVALCRHA------NAVRDSAKLILDA 396
+E L W + Y P +RI+ + R T RHA +AV +SAKL+ +
Sbjct: 22 REGLISWRLINYTIKSLPSIRISVTHERSR-KTDKKNIRHAFRHQLTDAVHNSAKLLDET 80
Query: 397 PQPEAEDAIILAKALRSRPPVNMLPAAKAGTFFTRNNLSNFIYWCHKALCILKCLLFKTD 576
QP+ + II ++ + TRN+ N I + C K F+T
Sbjct: 81 SQPQGVNKIISDFERGPTVFASLELDIRVSENGTRNHPINPIDSSEASCCFFKMAAFRTP 140
Query: 577 DLCLKKNE 600
KK E
Sbjct: 141 GNFSKKGE 148
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 487 TFFTRNNLSNFIYWCHKALCILKCLLFKTDDLCLKKN 597
+F + N+S F+ +C + L + + LF+T DL ++N
Sbjct: 336 SFVMQENISKFLDFCERVLGLDRLNLFQTVDLFERQN 372
>SB_37136| Best HMM Match : PI3Ka (HMM E-Value=1.7)
Length = 477
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 411 GLRLWSVEDQLSG--VPHGVRVPAQSDARVESVEEVISGDP 295
G RLWS SG P+ P + E VEE+ GDP
Sbjct: 364 GRRLWSSPRTPSGHTQPYSRNFPITISEKCEIVEEIQDGDP 404
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,605,747
Number of Sequences: 59808
Number of extensions: 378297
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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