Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0052
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 32 0.28
Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical pr... 29 3.4
U46673-7|AAC48154.1| 811|Caenorhabditis elegans Beta-catenin/ar... 28 4.5
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF063646-1|AAC17424.1| 811|Caenorhabditis elegans beta-catenin/... 28 4.5
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 28 5.9
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 27 7.9
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -2
Query: 347 HKATPVSSLSRKLSAVILSSGYSTVSHSARSSFIA*RYSSDDLNGLKGRASRSTAPALAI 168
H + SS R++ SSGY ++SH S+ R SSD LN L ++ +P + I
Sbjct: 105 HSSRSNSSTPRRVRHTTASSGYGSLSHLPPISY---RKSSDPLNSLMSQSMYVQSPGMHI 161
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -2
Query: 347 HKATPVSSLSRKLSAVILSSGYSTVSHSARSSFIA*RYSSDDLNGLKGRASRSTAPALAI 168
H + SS R++ SSGY ++SH S+ R SSD LN L ++ +P + I
Sbjct: 105 HSSRSNSSTPRRVRHTTASSGYGSLSHLPPISY---RKSSDPLNSLMSQSMYVQSPGMHI 161
>Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical
protein F20D1.3 protein.
Length = 463
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 142 VRVLITNKKMASAGAVLLEARPFRP--FKSSEEYLYAMKEDLAEWLTVLYPELRI 300
+R+ ++ +A G + RP P EY+ +M+EDL E + + P L+I
Sbjct: 118 IRLNVSRIDLAQDGLSIANVRPLIPQALTIGGEYICSMREDLPEIVVMANPGLQI 172
>U46673-7|AAC48154.1| 811|Caenorhabditis elegans
Beta-catenin/armadillo relatedprotein 1 protein.
Length = 811
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 290 SGYSTVSHSARSSFIA*RYSSDDLNGLKGRASRSTAPALA 171
SG+ T++HS S I+ + S L+G+ A P L+
Sbjct: 56 SGFQTMNHSEAPSIISSLHPSSHLSGMSSMADYEPIPTLS 95
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 235 YLYAMKEDLAEWLT-VLYPELRITADNFLDRL-DTGVALCRHANAVRDSAKLILDAPQPE 408
YL++MKED+ E T LY ++ ++ L V+ A + +++D PE
Sbjct: 530 YLFSMKEDIPETKTETLYRKILPNLSQYICALVKVMVSSVPSTKARHEGLNVLIDCLTPE 589
Query: 409 AEDAIILAKAL 441
E + IL+ ++
Sbjct: 590 MEASDILSNSI 600
>AF063646-1|AAC17424.1| 811|Caenorhabditis elegans
beta-catenin/armadillo homologBAR-1 protein.
Length = 811
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 290 SGYSTVSHSARSSFIA*RYSSDDLNGLKGRASRSTAPALA 171
SG+ T++HS S I+ + S L+G+ A P L+
Sbjct: 56 SGFQTMNHSEAPSIISSLHPSSHLSGMSSMADYEPIPTLS 95
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 293 SSGYSTVSHSARSSFIA*RYSSDDLNGLKGRASRSTAP 180
SS ST S SAR + +A R S D+L + R SR P
Sbjct: 898 SSILSTSSTSARKASVARRISVDELTKPEKRKSRQAVP 935
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 293 SSGYSTVSHSARSSFIA*RYSSDDLNGLKGRASRSTAP 180
SS ST S SAR + +A R S D+L + R SR P
Sbjct: 898 SSILSTSSTSARKASVARRISVDELTKPEKRKSRQAVP 935
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 78 NHNSTISKLLHETIDSR*T 22
NHN T SK++H+TI S T
Sbjct: 253 NHNDTSSKIMHQTIKSEST 271
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 259 LAEWLTVLYPE---LRITADNFLDRLDTGVALCRHANAVR-DSAKLIL 390
L EW+ L E + DNF ++L G LC+ NA++ S K I+
Sbjct: 33 LLEWIRDLTKEDFDCEASRDNFREQLKDGQRLCKLVNAIKAGSVKKIM 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,484
Number of Sequences: 27780
Number of extensions: 285673
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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