Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0052
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.76 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 399  WSVEDQLSGVPHGVRVPAQSDARVESVEEVISGDPEFGVQHRQPFSQVLLHSVEVLLR 226
            WS +D +  +  G R+PA  D   E++ +++    +    HR  F+  L  +++ L+R
Sbjct: 842  WSNQDVIKSIEKGYRLPAPMDC-PEAIYQLMLDCWQKERTHRPTFAN-LTQTLDKLIR 897


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 489 RAGFGGWEHVDRGTGAQCFCQ 427
           ++G G WE   +G GA+   Q
Sbjct: 148 QSGMGSWEVYTKGIGAKLLLQ 168


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 441 QCFCQNDGIFGLRLWSVEDQL 379
           + F  +DGIFG+ L  V + L
Sbjct: 246 ESFTVHDGIFGMALSPVTNNL 266


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 381 VDPRRSTTGGRRCHHSGKSTALPSPGQHAP 470
           ++P  S       HHS  S+AL     H+P
Sbjct: 273 LNPNSSLQPSLASHHSHLSSALGRSACHSP 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,771
Number of Sequences: 438
Number of extensions: 3353
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)