Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0051
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.56 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.56 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 184 DVRAITADHYNPLHIAAKQHNHDVAAALIEHNAPLTATTKKGFTAL 321
           DV A  A   NPL  +  Q N    A +  H+  +  TT    TAL
Sbjct: 141 DVEAGLASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSICTAL 186


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 184 DVRAITADHYNPLHIAAKQHNHDVAAALIEHNAPLTATTKKGFTAL 321
           DV A  A   NPL  +  Q N    A +  H+  +  TT    TAL
Sbjct: 136 DVEAGLASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSICTAL 181


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = -2

Query: 585 GQRSVLEERGCGLHLILTG------RNMKRCMPVLGYSLSISSFLKERSGDGLLVVLCSD 424
           G   +   RGC   +   G      +N+K C+P   Y   IS  L++    G +V + SD
Sbjct: 409 GSNQIAFSRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSD 468


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 285 PNCDHKERVHRSSSGCEVWEPEGCESFTGS 374
           PNC    +VH ++S       EG     GS
Sbjct: 403 PNCKINRKVHHTTSSSSAAGGEGLADRRGS 432


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 639 SHRNVRSASRGGARYPIRP 695
           S +++ +  R  +RYP+RP
Sbjct: 109 SRQDIETIIRRNSRYPLRP 127


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 413 VMPFLPAWSGAAP 375
           ++ FLP+W G  P
Sbjct: 24  ILMFLPSWDGKMP 36


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 731 KRRPVNCNTTHYRANWVPGP 672
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,696
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)