Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0050
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.69 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.8  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   8.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 526  PADTIAAPSVKETQNKASFETIKSGLKSLKTNSI 627
            P+DT    + K+T+  A+ ETI  GLK     S+
Sbjct: 1142 PSDTWFDENTKDTKITAASETILHGLKKYTNYSM 1175


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 23/144 (15%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
 Frame = +1

Query: 43  VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSD--LENVEVP 216
           +V ++  +Q    + + IK+I         + +  P+K++VE+ +    SD   E  +  
Sbjct: 179 IVLHMKEDQTEFLEEHKIKEIVKK----HSQFIGYPIKLVVEKEREKELSDDEAEEEKKE 234

Query: 217 DENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEV 396
           +E E+  +    + + G  + ++ + ++ +  +  ++  +  +    T  I  R      
Sbjct: 235 EEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDIS 294

Query: 397 SDGIGKWYARTEQINELQASLQHF 468
            +  G++Y       E   +++HF
Sbjct: 295 QEEYGEFYKSLTNDWEDHLAVKHF 318


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 241 PLVDLRNPGPPQHQEHETQNPEHHED 318
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 241 PLVDLRNPGPPQHQEHETQNPEHHED 318
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 241 PLVDLRNPGPPQHQEHETQNPEHHED 318
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 277 HQEHETQNPEHHE 315
           HQ+H  QN  H E
Sbjct: 314 HQQHHQQNMSHEE 326


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 341 SKMTLTQRKSLFVKASRK 394
           +KMTLTQ  + F  A R+
Sbjct: 124 TKMTLTQVSTWFANARRR 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.307    0.127    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,452
Number of Sequences: 336
Number of extensions: 2429
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)