Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0050
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 30 0.24
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 30 0.31
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 1.7
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 2.2
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 2.9
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 27 2.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 2.9
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 2.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 3.9
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 3.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.9
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 26 5.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 5.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.1
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 6.8
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 6.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 6.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 9.0
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 9.0
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 9.0
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 9.0
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 30.3 bits (65), Expect = 0.24
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +1
Query: 37 LNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVK----VIVEEIKPSLKSDLEN 204
+ VE ELID+A DI + + VD V+ ++ +E++ + + D+E
Sbjct: 867 IGFVEKPDKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEK 926
Query: 205 VEVPDENE-EIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 366
E+ D E + L L + E Q+PE ++S +ND T E
Sbjct: 927 DELEDIKEVKEDENLTTLEETIEIPANDIEVQDPEQC----SCMNSTENDNITTE 977
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 29.9 bits (64), Expect = 0.31
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Frame = +1
Query: 49 ENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLENVEVP---- 216
+N E +D +N +++ + +NK E ++ + EE K S+ E+ +
Sbjct: 78 DNSKKESTNLDDSNMLEEPKHHDNSNK-ESTNLDDLNMSEEPKHHDSSNKESTNLDNSNM 136
Query: 217 DENEEIK-------RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 366
DE+E K +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 137 DESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +1
Query: 1 IPDKVPE--AEDKPL--NVVENLSSEQELIDQANTIKDI-DNSLRANKKEVVDIPVKVIV 165
+ VPE AED + + V SE + +++ ++D +NS+ +KK +P
Sbjct: 505 LQSSVPENKAEDSVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKT 564
Query: 166 EEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPG 267
E PS+ + +N P+ + + P V PG
Sbjct: 565 EGYTPSVVREEKNYSEPNASPSVIPPRVPTPVPG 598
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 112 SLRANKKEVVDIPVKVIVEEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 291
SL N +++ ++ E I+ S + E+ ENE + +DLR ++ E
Sbjct: 5 SLSPNVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTAINLEEQLE 64
Query: 292 TQNPEHHEDAEKIVS 336
T E+ E+ K+ +
Sbjct: 65 TVQNENEENKTKLAA 79
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/89 (22%), Positives = 35/89 (39%)
Frame = +1
Query: 37 LNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLENVEVP 216
L N ++Q + NT + + +E P E KP+ E +
Sbjct: 65 LTAAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSLSASHE-KPARPQTGEGSDNE 123
Query: 217 DENEEIKRPLVDLRNPGPPQHQEHETQNP 303
DE+E+I + DL + + Q E ++P
Sbjct: 124 DEDEDIDALIEDLYSQDQEEEQVEEEESP 152
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 328 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 504
++SS N + + A G +++ D + EQ+ L + E FG ++Q++
Sbjct: 1 MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58
Query: 505 ETLHFIKPADTIAAPSVKETQNKASFETIKS 597
E L KP +T T NKA FE ++S
Sbjct: 59 ECLKGKKPENT----EDGATSNKA-FEGLRS 84
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 271 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 357
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 260 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 367
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 193 DLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 339
D E+ + P + E K P + GP + H+ +H+E E+ + S
Sbjct: 388 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQS 436
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 178 PSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 300
PS K E +++ E I + VD+ NPG + ET N
Sbjct: 40 PSSKFQNEPLQLNSEESSIMQRYVDMLNPGATFVNDSETFN 80
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 19 EAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDI--PVKVIVEEIKPSLKS 192
E ++ ++ E L+S++ + ++ I NS +VD +++ +K LK+
Sbjct: 741 ELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKA 800
Query: 193 DLENVE 210
DL N+E
Sbjct: 801 DLSNLE 806
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 3.9
Identities = 26/109 (23%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Frame = +1
Query: 55 LSSEQE--LIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLENV-----EV 213
+SSE E L+ + T K +++ + N+ + ++ V+ +++E K +LE + ++
Sbjct: 1051 VSSEYENLLLISSQTNKSLED--KTNQLKYIEKNVQKLLDE-KDQRNVELEELTSKYGKL 1107
Query: 214 PDENEEIKRPLVDLRNPGPPQHQ--EHETQNPEHHEDAEKIVSSVKNDI 354
+EN +IK L+ LR QH + + + DA + +++ KN++
Sbjct: 1108 GEENAQIKDELLALRKKSKKQHDLCANFVDDLKEKSDALEQLTNEKNEL 1156
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 406 IGKWYARTEQINELQASLQHFQENFGAQIQKLNETL------HFIKPADTIAAPSVKETQ 567
+ K++ + A +HF EN+ + K E + HFI + + +
Sbjct: 29 VSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKKIASVK 88
Query: 568 NKASFETIKSGLKSLKTNS 624
N S ETI + K+ NS
Sbjct: 89 NLYSIETIDTEKKARLVNS 107
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 268 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 435
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 427 TEQINELQASLQHFQENFGAQIQKLNETL 513
+ ++N+LQ ++ + F QI+KLN +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 373 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 525
+ Q E+ D + K ++IN + + + F+E + KLN+ L +I+
Sbjct: 9 MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 130 KEVVDIPVKVIVEEIKPSLKSDLEN 204
K VVDI + ++EIKP+++ L N
Sbjct: 90 KYVVDISPDIDIKEIKPNIRVALRN 114
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 263 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 406
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.0
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Frame = +1
Query: 178 PSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQE---HETQNPEHHED--AEKIVSSV 342
PSLK D ++ + +E+ + LV + P P + + E P+ H A V+S+
Sbjct: 162 PSLKLDRQDAPIQINHEQKEDFLVSIPRPTPMTNLDDGKDEIGQPDPHRKYMAPPRVNSI 221
Query: 343 KNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAS--LQHFQENFGAQIQKLNETL 513
GF + D K + N+L+++ ++ +E GA+ + T+
Sbjct: 222 SRVQRRMSYIPYGGFDDFLDNYYKDDDTVLEDNQLKSNSRIETLEEEDGAESDSITNTV 280
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 508 FHSTFVFERRNFLGNVAS 455
FHSTF+F+ F NV S
Sbjct: 531 FHSTFLFQNYEFSDNVIS 548
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 269 PRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK---SLFVKASRKCQTVLENGTLVPSKL 439
P + ST + ++ K+S+ S + +K SLF+K ++ + T P K
Sbjct: 506 PPTASSTTNNPSSSQINQKRSYSTSSLFSKNKKMNRSLFLKGGKRFFSAEAQKTQKPLKA 565
Query: 440 TSSRPA 457
SS+PA
Sbjct: 566 VSSKPA 571
>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 250
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = +1
Query: 439 NELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVKETQNKASFETIKSGLKSL 612
NELQ+ L ++ +++ + T+H I S + +A++ ++ K L
Sbjct: 73 NELQSDLDGYERRIPPRLRAVWPTIHSIPDESFFDGTSASRFRQEAAYLAVRLASKKL 130
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 334 SSVKNDINTAE------IALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQ 495
S +K+ +N+ E +++R+ FQ+ SD K +Q+N L ENF +
Sbjct: 276 SPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLNNLVGLSTGNSENFTPE-- 333
Query: 496 KLNETLHFIKPADTIAAPSVKETQNKASF 582
N + + P ++P + ++Q+ + F
Sbjct: 334 --NNSFSWTHPKKNSSSP-LPQSQSSSIF 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.127 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,722
Number of Sequences: 5004
Number of extensions: 42415
Number of successful extensions: 164
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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