Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0049
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 345 3e-95
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 344 4e-95
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 343 6e-95
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.86
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 29 3.5
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.5
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.6
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 4.6
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.6
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.1
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 8.0
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 8.0
04_04_1303 - 32487174-32487871,32488583-32489123 28 8.0
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 345 bits (847), Expect = 3e-95
Identities = 151/230 (65%), Positives = 188/230 (81%)
Frame = +1
Query: 1 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 180
KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 10 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH 69
Query: 181 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 360
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 70 VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129
Query: 361 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 540
G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT 189
Query: 541 GRVGTIVSRERHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKGTKAYISLP 690
GRVG I +RE+H GSF+ +H++D+ GH F+TRL NVF IGKG K ++SLP
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLP 239
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 344 bits (846), Expect = 4e-95
Identities = 153/230 (66%), Positives = 187/230 (81%)
Frame = +1
Query: 1 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 180
KRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR
Sbjct: 26 KRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRH 85
Query: 181 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 360
+ VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V
Sbjct: 86 VMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSV 145
Query: 361 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 540
G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN
Sbjct: 146 QFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNT 205
Query: 541 GRVGTIVSRERHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKGTKAYISLP 690
GRVG I SRE+H GSF+ +H++D+ GH F+TR+ NVF IGK K ++SLP
Sbjct: 206 GRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLP 255
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 343 bits (844), Expect = 6e-95
Identities = 150/230 (65%), Positives = 188/230 (81%)
Frame = +1
Query: 1 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 180
KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 10 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH 69
Query: 181 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 360
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 70 VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129
Query: 361 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 540
G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT 189
Query: 541 GRVGTIVSRERHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKGTKAYISLP 690
GRVG I +RE+H GSF+ +H++D+ GH F+TRL NVF IGKG K ++SLP
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLP 239
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 118 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 17
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 653 MNTLFNLVEKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 531
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 131 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 3
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 15 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 179
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -3
Query: 629 EKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 501
EK+C V+S S +PG +SRD VP KL P K P+
Sbjct: 1553 EKLCQVDS---PDSPQPGGISRDADVPKVVKLEVPPESSKEPE 1592
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 551 APSCPARDI--PAPSTLCTSRTPRDTPSP 631
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 268 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 372
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 628 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 533
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 394 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 528
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 636 PRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPR 502
P GE ++R VL V AG++ G H P + R T+ P+
Sbjct: 170 PGGEEIARSVLRVR----AGLACRGTQAFHPPDIHRGRAATRTPK 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,750,723
Number of Sequences: 37544
Number of extensions: 503065
Number of successful extensions: 1668
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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