Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0046
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   3.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   3.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   4.8  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   4.8  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   6.4  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    24   8.5  

>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -1

Query: 405 HPLEGLLGFGVRISCGAGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHST 241
           HP E L   G   S         ++VQ  P S + PPL     PP +S+    ST
Sbjct: 306 HPYESLFSAGQPPSLPISPSTSQNSVQPFPFSIQQPPL--HLEPPLSSNTLNSST 358


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 209 FQRHKNTLIHIKSLKHDKIH*DQLFLECTR*TKLNIVQPSQDINE 75
           FQR    +   KS+K  K+    L L+C    KL +  P Q   E
Sbjct: 110 FQRTNEKIQRNKSIKRVKLFHGNLILDCPIPKKLLVTLPQQTERE 154


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 36  TFHMIFERNPKTFLVNVLRRLYNI*FSSSG 125
           T H++ +  P+  +++++  ++N  FSSSG
Sbjct: 803 TSHLLMDYRPQGSILDLVNSMHNSTFSSSG 832


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 18/76 (23%), Positives = 27/76 (35%)
 Frame = +2

Query: 116 FIWCILKIIDPNVFCRVLMI*CV*VCFYDVEKQFCVPVCALSVECMASEDACGGRAEAVS 295
           + W IL II   V     M+  V     D+ + +C      + +         G  +   
Sbjct: 96  YSWFILSIIGTTVGFAAYMLDIVTSWLSDIRRGYCTSHWYYNEKFCCWYSETMGMFKHDL 155

Query: 296 GGDSREHGCACTAWSP 343
             D    G +CTAW P
Sbjct: 156 YNDLTFQGSSCTAWKP 171


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 212 AFQRHKNTLIHIKSLKHDKIH*DQL--FLECTR*TKLNIVQPSQDINE 75
           AF+++      I  L+H ++H +QL   L+  R T   ++  SQ ++E
Sbjct: 20  AFEKYGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLIVTSQRVSE 67


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 417 LTRRHPLEGLLGFGVRISCGAGCRRGDHAVQAQPCSRE 304
           +T   P   +L   V +SC  G      A   QPCS++
Sbjct: 353 VTFNMPFASVLPLAVSVSCDLGTASAYVASLPQPCSQK 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,623
Number of Sequences: 5004
Number of extensions: 27766
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)