Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0046
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0047 + 7793337-7793969 32 0.17
10_01_0311 + 3441911-3443035 29 1.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 1.5
10_08_0748 - 20277623-20277736,20277956-20279425 28 2.7
07_03_1460 - 26687630-26688310 28 2.7
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671... 28 2.7
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 28 3.6
06_01_0696 + 5071555-5071922,5072252-5072333,5073969-5074070,507... 28 3.6
02_01_0035 - 220036-221419,222050-222801 28 3.6
01_05_0213 - 19355785-19356522 28 3.6
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563... 27 4.7
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 27 4.7
08_02_0928 - 22688277-22688648,22689378-22689443,22689543-226895... 27 4.7
08_02_0038 + 11497286-11497876 27 4.7
03_06_0278 - 32817707-32819167 27 4.7
12_02_1215 + 27070164-27070302,27070308-27071098 27 6.2
08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554... 27 6.2
06_01_1012 + 7926408-7927232 27 6.2
01_01_0370 + 2895685-2895717,2895892-2896944 27 6.2
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 27 8.2
04_03_0801 - 19828175-19828770,19828913-19828994 27 8.2
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 27 8.2
01_06_0172 + 27214051-27214596 27 8.2
>05_03_0047 + 7793337-7793969
Length = 210
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 339 DHAVQAQPCSRESPPLTASARP 274
DHA A+P S PP TA+ARP
Sbjct: 24 DHAAAAEPMSSSPPPATATARP 45
>10_01_0311 + 3441911-3443035
Length = 374
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 348 RRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTD 238
R D AQ C P A+A PP A + HS+D
Sbjct: 177 RASDEPRHAQHCGAPGSPGLATAFPPFAEPIGAHSSD 213
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 323 ACTAWSPRRQPAPHEILTPKPRRPSSGCR 409
A T PRR P+P LTP R PS R
Sbjct: 196 AKTLTPPRRSPSPASTLTPPRRSPSPASR 224
>10_08_0748 - 20277623-20277736,20277956-20279425
Length = 527
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 233 ALSVECMASEDACGGRAEAVSGGDSREHGCACTAWSP-RRQPAPHE 367
AL+ E +D C R A+ G D R H C P R P H+
Sbjct: 261 ALAEELAKMQDGCLHRYPALYGSDDRIHACMSELGVPLTRHPGFHQ 306
>07_03_1460 - 26687630-26688310
Length = 226
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 236 LSVECMASEDACGGRAEAVSGGDSREHGC-ACTAWSPR 346
L++ ++ GGR EA + GD RE GC A SPR
Sbjct: 20 LAIAQARGKEEWGGRTEATTSGDRRE-GCPTAQAGSPR 56
>03_05_0893 +
28566436-28566501,28566624-28566903,28567002-28567188,
28567353-28567423,28567523-28567600,28567687-28567774,
28567875-28567930,28568054-28568121
Length = 297
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 248 CMASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKPR 388
C A + + S SR G T +PRR P P +LTP R
Sbjct: 33 CAGEFSAIASASASASAAASRRAGIGGT--TPRRNPKPPRVLTPLRR 77
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 254 ASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKPR 388
+SED GG G SR G A SP P P ++ P+ R
Sbjct: 619 SSEDTVGGSGSGSGRGSSRGGGGAREIMSPSPSPPP-VVVAPRKR 662
>06_01_0696 +
5071555-5071922,5072252-5072333,5073969-5074070,
5074191-5074247,5074576-5074719,5075175-5075245,
5075363-5075468
Length = 309
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 21 LKTFRTFHMIFERNPKTFLVNVL 89
L F+TF +FERN TFL VL
Sbjct: 130 LNFFKTFGNLFERNDITFLFKVL 152
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 378 GVRISCGAGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTDKAHTGTQ 217
G + G+G D+A+ A P + P A+A PPH ++ + + AH Q
Sbjct: 326 GPQTGSGSGLTGDDNAMLAPPMA--DLPDAAAANPPHLNTSETSAGEDAHAVVQ 377
>01_05_0213 - 19355785-19356522
Length = 245
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 303 SPPLTASARPPHASSLAIHSTDKAHTGTQNCFSTS*KHTYTH 178
SPP + + PP +S A H HT T +C TS Y++
Sbjct: 35 SPPYSPAQSPPPPTSPAYHDDHADHT-TNSCTFTSAGGAYSY 75
>12_02_0763 +
22953749-22953884,22955036-22955199,22955695-22956307,
22968553-22968874,22969107-22969373,22969692-22970460
Length = 756
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 351 CRRGDHAVQAQPCSRESPPLTA 286
CR G H +A P S ESPP TA
Sbjct: 171 CRTGRHRCRADP-SSESPPATA 191
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 236 LSVECMASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEI 370
+ +E SE A GGR A S C P QP+P ++
Sbjct: 1 MDIEAPNSEVAAGGRRPAADHWRSAMDALICNCLRPPPQPSPADL 45
>08_02_0928 -
22688277-22688648,22689378-22689443,22689543-22689591,
22689677-22689684
Length = 164
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 338 SPRRQPAPHEILTPKPRRPSSG 403
+P R+PAP + PRRPS G
Sbjct: 121 APSRRPAPPSVELSMPRRPSVG 142
>08_02_0038 + 11497286-11497876
Length = 196
Score = 27.5 bits (58), Expect = 4.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 200 DVEKQFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTAWSP--RRQPAPHEIL 373
D E+ VPV A+ + +S + GG + + G + T+W R P+P
Sbjct: 92 DAEEAIPVPVVAMKLLSPSSSSSAGGDSSSAKGWNRN------TSWGTDVYRSPSPPNAS 145
Query: 374 TPKPRRPSSGCRLV 415
+P SG RLV
Sbjct: 146 LDCIAQPKSGERLV 159
>03_06_0278 - 32817707-32819167
Length = 486
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 357 AGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTD 238
+GC GD A+ +R L A PP S+LAI D
Sbjct: 82 SGCGDGDGDAAAEALARGLTLLVRLADPPAVSALAIRPAD 121
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +2
Query: 299 GDSREHGCACTAWS---PRRQPAPHEILTPKPRR 391
GD GC C WS RR+P ++T RR
Sbjct: 147 GDGTAAGCGCGGWSRWQRRRRPFVEAVVTSAARR 180
>08_02_0056 +
11751585-11751672,11751741-11752060,11755363-11755483,
11755950-11756137,11756224-11756355,11756535-11756577,
11757298-11757395
Length = 329
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 393 GLLGFGV-RISCGAGCRRGDHAVQA 322
GL+G V R CG GC G+ AV A
Sbjct: 33 GLVGVAVWRCGCGGGCGGGEDAVAA 57
>06_01_1012 + 7926408-7927232
Length = 274
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +2
Query: 221 VPVCALSVECMAS-EDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKPRRPS 397
V VC +SV S A GG + R H T+ + PA +P + PS
Sbjct: 167 VAVCGVSVPVPVSIAAAAGGECDDAKSEHRRRHHHKTTSAAKNANPAAAPPRSPAKKAPS 226
Query: 398 SG 403
G
Sbjct: 227 GG 228
>01_01_0370 + 2895685-2895717,2895892-2896944
Length = 361
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -1
Query: 372 RISCGAGCRRGDHAVQAQPCSRESPPLTASARPP 271
R++ AG R DH V A P ESP L A A PP
Sbjct: 259 RLALPAGATR-DHPV-ANPFGPESPSLEAVALPP 290
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 251 MASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKPRRPSSG 403
MA GGRA+ + + + A P PAP+ + P PR+ G
Sbjct: 295 MAQHGGAGGRAQGLDEQVTNKFASGKAA-DPPSYPAPNPGMMPAPRKKELG 344
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +2
Query: 248 CMASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKP 385
C D CGG GG+ G C P P + + P P
Sbjct: 161 CKCGVDGCGGGCSGGHGGECGGGGGGCKKPCCSPPPCPWQPVCPPP 206
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 303 SPPLTASARPPHASSLAIHSTDKA 232
+PP ++SA PPH++++ + S A
Sbjct: 52 TPPQSSSASPPHSAAIVVSSQTHA 75
>01_06_0172 + 27214051-27214596
Length = 181
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 254 ASEDACGGRAEAVSGGDSREHGCACTAWSPR 346
A+ D CGG+A A+ G R G W R
Sbjct: 18 AATDECGGKAAAMGGVKQRRGGGGGGGWVKR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,623,852
Number of Sequences: 37544
Number of extensions: 207153
Number of successful extensions: 895
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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