Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0046
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 3.7
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 28 3.7
SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 28 3.7
SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35) 28 3.7
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 27 4.8
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36) 27 6.4
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28) 27 8.5
SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96) 27 8.5
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 230 CALSVECMASEDACGGRAEAVSGGDSREHGCACTA 334
CA C+ SE C G ++ G D E+ CTA
Sbjct: 3093 CATGRRCIPSEWRCDGESDCEDGSD--ENSAQCTA 3125
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 27.9 bits (59), Expect = 3.7
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 353 PAPHEILTPKPRRPSS 400
P+PH+ +TP+P RP++
Sbjct: 55 PSPHDPITPRPHRPTA 70
>SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 338 SPRRQPAPHEILTPKPRRPSSGCRLVRK 421
SPR P TPKPR PS G RK
Sbjct: 43 SPRASPKATRKSTPKPRTPSKGRSPSRK 70
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 239 SVECMASEDACGGRAEAVSGGDSREH---GCACTAWSPRRQPAPHEILTPKPRRPSSGCR 409
S + + D GG SGG S H G + ++ S R P+ + P P SSG
Sbjct: 446 SDDSASDSDGGGGGGGGGSGGSSPSHRSSGSSSSSSSRRSSPSGSPAI-PTPSGSSSGSS 504
Query: 410 LVRK 421
+VR+
Sbjct: 505 IVRR 508
>SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)
Length = 716
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 320 CACTAWSP--RRQPAPHEILTPKPRRPSSGCRL 412
C W+P RR+P +I P P RP +G R+
Sbjct: 563 CLENGWTPLPRRRPYCRKISCPDPGRPDNGRRI 595
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 405 HPLEGLLGFGVRISCGAGCRRGDHAVQAQPCSR-ESPPLTASARPPHA 265
HP G G GV++ GC+ D+ + + +SPP AS+ P A
Sbjct: 1435 HPNGGSPGAGVKLRLWPGCQSPDNKLVLDMYFKGKSPPKPASSSTPTA 1482
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 215 FCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA 334
F P C ++V+ ASE G A V G +S + C+CTA
Sbjct: 125 FLGPTCEINVDDCASEPCLNGGA-CVDGANS--YLCSCTA 161
>SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 375 VRISCGAGCRRGDHAVQAQPCSRESPPLTASARPPHASS 259
+++S CR G H P E PP S+ P++ S
Sbjct: 13 IKVSSSKDCRGGIHNGPGDPLVLERPPPRWSSNSPYSES 51
>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
Length = 1173
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 327 QAQPCSRESPPLTASARPPHASSLAI 250
QA PC R P L +A P A LAI
Sbjct: 1039 QASPCPRPRPRLGQAALTPRAQPLAI 1064
>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
Length = 478
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 9 EKNYLKTFRTFHMIFE-RNPKTFLVNVLRRL 98
+KN L+TFRTF +++E + T + NV R+
Sbjct: 144 QKNKLRTFRTFKVVYELQKYLTQINNVQHRI 174
>SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 236 LSVECMASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKPRRPSS 400
L+V + +D AV+ S EH + W+P +P + P RP S
Sbjct: 71 LTVTTRSEQDYGSYTCRAVNSVGSHEHVISVIQWTPPGKPESISMNRDPPERPVS 125
>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
Length = 725
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 393 GLLGFGVRISCGAGCRRGDHAVQAQPCSRESPPLTASARPP-HASSLAIH 247
GL+GF + I CR H V A+ ++ + A A PP H S + H
Sbjct: 528 GLVGFFIFIPATVKCRTITHTVNAE--TQTDASIFAHAYPPAHESRMCEH 575
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,843
Number of Sequences: 59808
Number of extensions: 232865
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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