Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0046
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 29 1.0
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 29 1.4
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 1.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 1.8
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 29 1.8
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 29 1.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 1.8
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 1.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 3.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 3.2
AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical ... 28 3.2
Z93389-7|CAJ43450.2| 201|Caenorhabditis elegans Hypothetical pr... 27 7.3
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 27 7.3
AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical ... 27 7.3
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z49867-3|CAA90029.2| 433|Caenorhabditis elegans Hypothetical pr... 26 9.7
U25175-1|AAC36130.1| 433|Caenorhabditis elegans GATA-factor pro... 26 9.7
AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical ... 26 9.7
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 26 9.7
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 366 SCGAGCRRGDHAVQAQPCSRESP-PLTASARPP 271
SCG+GC G +V+ +PC +++ P T +PP
Sbjct: 168 SCGSGCTGG--SVEQEPCPQQAACPCTTCNQPP 198
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 230 CALSVECMASEDACGGRAEAVSGGDSREHGCAC 328
C+ +C+ C G AE G D EH C+C
Sbjct: 463 CSADKKCLPFHTRCNGVAECSDGSD--EHKCSC 493
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 357 AGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTDKAHTG 223
A C G HA ++ P + E LTA+ +PP S + +T K+ G
Sbjct: 80 AECSSG-HASESSPTTTEPVDLTATPKPPSTSEM--ETTSKSDDG 121
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 357 AGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTDKAHTG 223
A C G HA ++ P + E LTA+ +PP S + +T K+ G
Sbjct: 301 AECSSG-HASESSPTTTEPVDLTATPKPPSTSEM--ETTSKSDDG 342
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +2
Query: 212 QFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA----WSPRRQPAPHEILTP 379
+ C P AL EC + C A+ + + C C+A SP R P + P
Sbjct: 1424 RICRP--ALVDECRTGKHDC--HVNAICQDLPQGYTCQCSADFVDVSPHRASHPGRLCQP 1479
Query: 380 KPRRPSSGCRL 412
+P P CRL
Sbjct: 1480 RPTPPPPECRL 1490
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +2
Query: 212 QFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA----WSPRRQPAPHEILTP 379
+ C P AL EC + C A+ + + C C+A SP R P + P
Sbjct: 2008 RICRP--ALVDECRTGKHDC--HVNAICQDLPQGYTCQCSADFVDVSPHRASHPGRLCQP 2063
Query: 380 KPRRPSSGCRL 412
+P P CRL
Sbjct: 2064 RPTPPPPECRL 2074
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +2
Query: 212 QFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA----WSPRRQPAPHEILTP 379
+ C P AL EC + C A+ + + C C+A SP R P + P
Sbjct: 1424 RICRP--ALVDECRTGKHDC--HVNAICQDLPQGYTCQCSADFVDVSPHRASHPGRLCQP 1479
Query: 380 KPRRPSSGCRL 412
+P P CRL
Sbjct: 1480 RPTPPPPECRL 1490
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +2
Query: 212 QFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA----WSPRRQPAPHEILTP 379
+ C P AL EC + C A+ + + C C+A SP R P + P
Sbjct: 2008 RICRP--ALVDECRTGKHDC--HVNAICQDLPQGYTCQCSADFVDVSPHRASHPGRLCQP 2063
Query: 380 KPRRPSSGCRL 412
+P P CRL
Sbjct: 2064 RPTPPPPECRL 2074
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 357 AGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTDKAHTG 223
A C G HA ++ P + E LTA+ +PP S + +T K+ G
Sbjct: 80 AECSSG-HASESSPTTTEPVDLTATPKPPSTSEM--ETTSKSDDG 121
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 357 AGCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTDKAHTG 223
A C G HA ++ P + E LTA+ +PP S + +T K+ G
Sbjct: 301 AECSSG-HASESSPTTTEPVDLTATPKPPSTSEM--ETTSKSDDG 342
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +2
Query: 212 QFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA----WSPRRQPAPHEILTP 379
+ C P AL EC + C A+ + + C C+A SP R P + P
Sbjct: 2008 RICRP--ALVDECRTGKHDC--HVNAICQDLPQGYTCQCSADFVDVSPHRASHPGRLCQP 2063
Query: 380 KPRRPSSGCRL 412
+P P CRL
Sbjct: 2064 RPTPPPPECRL 2074
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 209 KQFCVPVCALSVECMASEDACGGRAEAVSGGDSREHGC 322
K+ C VC S C+ ++D C G+ + G D E C
Sbjct: 1028 KKECAIVCDNS--CVHADDLCDGKKKCNDGSDEDEEAC 1063
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = +2
Query: 200 DVEKQFCVPV--------CALSVECMASEDACGGRAEAVSGGDSREHGCACTAWS 340
D +K+ C PV CA +C+ + C G+++ G D E CA TA S
Sbjct: 1217 DEDKERCPPVQCSALQFRCANGRQCVPLRNHCDGQSDCEDGSD--EDSCAVTAES 1269
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = +2
Query: 200 DVEKQFCVPV--------CALSVECMASEDACGGRAEAVSGGDSREHGCACTAWS 340
D +K+ C PV CA +C+ + C G+++ G D E CA TA S
Sbjct: 1217 DEDKERCPPVQCSALQFRCANGRQCVPLRNHCDGQSDCEDGSD--EDSCAVTAES 1269
>AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical
protein Y50E8A.16 protein.
Length = 807
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +2
Query: 104 YLV*FIWCILKIIDPNVFCRVLMI*CV*VCFYDVEKQFCVPVCAL 238
Y++ F+ CIL +I+P ++ + +M + + +DV K+ C+ + A+
Sbjct: 237 YVLLFVDCILNLIEPALYSQ-MMSTAIRMKSFDVLKRACIVLAAV 280
>Z93389-7|CAJ43450.2| 201|Caenorhabditis elegans Hypothetical
protein T13F3.9 protein.
Length = 201
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 312 STAAPAPRGHRADNLPRMRSLHRNLEDPQVDV 407
ST A + DN+P + +L ++ +P+VDV
Sbjct: 88 STCAEKLIAKKDDNIPCLNTLFNDIHEPEVDV 119
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 333 AVQAQPCSRESPPLTASARPP 271
A QA P S ++PP + SA PP
Sbjct: 819 APQALPTSSQTPPTSGSAAPP 839
>AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical
protein C35A11.1 protein.
Length = 429
Score = 26.6 bits (56), Expect = 7.3
Identities = 6/21 (28%), Positives = 15/21 (71%)
Frame = +3
Query: 198 MTLKSSSVYRCVLYQWNVWLV 260
M ++++ C L++WN+W++
Sbjct: 209 MVSHAATINNCRLFKWNIWMI 229
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical protein
M02G9.1 protein.
Length = 909
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +2
Query: 179 CV*VCFYDVEKQFCVPVCALSVEC----MASEDACGG--RAEAV-SGGDSREHGCAC 328
C C++ C P CA + E ++ EDAC + + V SG +SR+ G AC
Sbjct: 837 CTQQCYHQAPT--CAPACASACEAQCPVVSCEDACQTVCKGQCVFSGQNSRQCGPAC 891
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 303 THVSTAAPAPRGHRADNLPRMRSLHRNLEDPQVDVAW 413
TH+S+ P G +D ++S++R ++ + W
Sbjct: 1964 THISSVPKLPEGQISDLRQNIKSMNREIQTALEHIGW 2000
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 303 THVSTAAPAPRGHRADNLPRMRSLHRNLEDPQVDVAW 413
TH+S+ P G +D ++S++R ++ + W
Sbjct: 1981 THISSVPKLPEGQISDLRQNIKSMNREIQTALEHIGW 2017
>Z49867-3|CAA90029.2| 433|Caenorhabditis elegans Hypothetical
protein C33D3.1 protein.
Length = 433
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 224 PVCALSVECMASEDACGGRAEAVSGG 301
P A + EC+ +CG +AV+GG
Sbjct: 145 PTVAPTYECVKCSQSCGAGMKAVNGG 170
>U25175-1|AAC36130.1| 433|Caenorhabditis elegans GATA-factor
protein.
Length = 433
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 224 PVCALSVECMASEDACGGRAEAVSGG 301
P A + EC+ +CG +AV+GG
Sbjct: 145 PTVAPTYECVKCSQSCGAGMKAVNGG 170
>AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical
protein M70.1 protein.
Length = 931
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -1
Query: 330 VQAQPCSRESPPLTASARPPHASSL----AIHSTDKAHTGTQNCFSTS*KHTYT 181
V + E P + +P H S+ A ++ + + QNC S S HT T
Sbjct: 854 VNVKKAETEKPKTEVTPKPAHKSAASKVDATNTKTEDQSSAQNCISQSMTHTET 907
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 303 THVSTAAPAPRGHRADNLPRMRSLHRNLEDPQVDVAW 413
TH+S+ P G +D ++S++R ++ + W
Sbjct: 1964 THISSVPKLPEGQISDLRQNIKSMNREIQTALEHIGW 2000
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,038,543
Number of Sequences: 27780
Number of extensions: 169602
Number of successful extensions: 610
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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