Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0046
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.11 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   4.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   7.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   10.0 

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 288 ASARPPHASSLAIHSTDKAHTGTQNCFS 205
           AS RPP ++S   H  +  HT T N  S
Sbjct: 269 ASDRPPASASSNEHEAESEHTSTPNFLS 296



 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 344 RRQPAPHEILTPKPR 388
           RR P PH+    KPR
Sbjct: 181 RRTPDPHDETAKKPR 195


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -1

Query: 414 TRRHPLEGLLGFGVRISCGAGCRRGDHAVQAQPCSRE 304
           T RH   GLL    R       R   HAV  +  SRE
Sbjct: 81  TSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQLSRE 117


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 115 LN*ILYNLLKTLTRNVF 65
           +N ILYNL+    RN F
Sbjct: 323 INPILYNLMSIKYRNAF 339


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 115 LN*ILYNLLKTLTRNVF 65
           +N ILYN++    RN F
Sbjct: 311 INPILYNVMSAKYRNAF 327


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 78  RGMFSDYVQISY 43
           RG  +DYV ISY
Sbjct: 111 RGFRTDYVMISY 122


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 206 QRHKNTLIHIKSLKHDKIH*DQLFLECTR 120
           +R K +L  +K L++D+I   +  L+C +
Sbjct: 124 KRRKKSLDDVKILRNDRIDSYKSNLKCDK 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,386
Number of Sequences: 438
Number of extensions: 2056
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)