Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0045
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.27 
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    28   1.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 840 GVPQGSILGPLLFIIYINDLPEHI 769
           G PQGSI+ P+L  IY++ L E I
Sbjct: 420 GTPQGSIVSPILANIYLHQLDEFI 443


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 228 TAPSIYIQECCLFVKKHPQLYESYGEYCQFNTRYPTK 118
           T P  Y  +      KHP LY++     +FN RY TK
Sbjct: 173 TEPIGYSNDWFAATPKHPFLYQAIHNLSKFNHRYFTK 209


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 840 GVPQGSILGPLLFIIYINDL 781
           G+PQGSIL   L   Y+ DL
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,815
Number of Sequences: 5004
Number of extensions: 70672
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)