Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0045
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 57 2e-08
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 55 5e-08
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY013955-1|AAG59937.1| 27|Caenorhabditis elegans LINE-like rev... 29 5.4
AY013956-1|AAG59938.1| 27|Caenorhabditis elegans LINE-like rev... 28 7.2
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 28 7.2
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 56.8 bits (131), Expect = 2e-08
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 4/182 (2%)
Frame = -2
Query: 840 GVPQGSILGPLLFIIYIN----DLPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVS 673
GVPQGS+ GPLLFI++IN DL I+ C FADD+ + T D T+ I ++
Sbjct: 880 GVPQGSVSGPLLFILFINNLLIDLAPTINISC--FADDVKIFHT-DPTI-----IQNSID 931
Query: 672 KVIDWMNKNNLKANLDKTRYMQLYNRHKFXXXXXXXXXXXXNECNSIRFLGLNVDNQCSW 493
++ W N L K+ + L R+K +++R LGL D + +
Sbjct: 932 IIVSWSKLNELPLAPTKSALLALGTRNK--NQSYSVDGVPITPSSTVRDLGLITDCKLKF 989
Query: 492 NLHIDLICSKLNRFSYALWRLTKICNLKTALQAYHGYVASNIRYCIPLWGNSSHINRVYI 313
HI + S + + + K Y YVA + YC ++ + H N V
Sbjct: 990 EHHIVKVSCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVY--APHSNSVLS 1047
Query: 312 AQ 307
A+
Sbjct: 1048 AK 1049
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = -2
Query: 840 GVPQGSILGPLLFIIYIND----LPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVS 673
GVPQG++L PLLF IY+ND LPE + C FADD + + T + + + + +
Sbjct: 76 GVPQGAVLSPLLFGIYVNDISSILPEKV--ACKQFADDTKLYASTPKT-ESENNLQSALD 132
Query: 672 KVIDWMNKNNLKANLDKTRYMQLYNR 595
V+DW + L N KT ++ + R
Sbjct: 133 AVVDWTKGSKLTLNQSKTVHVTVGKR 158
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = -2
Query: 840 GVPQGSILGPLLFIIYINDLPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVSKVID 661
GVPQGS++ P LF Y+ D+P +ADD++++ +K+ + ++
Sbjct: 532 GVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAK 591
Query: 660 WMNKNNLKANLDKT 619
++ + + + +K+
Sbjct: 592 YLKERGMSISAEKS 605
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 840 GVPQGSILGPLLFIIYINDLPEHI--HYPCSIFADDIAVVITKDATLDLNDKINATVSKV 667
GVP+GS+ GP LF+I+IN L + CS FADD+ V I T+ +
Sbjct: 56 GVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHSPPL------IQTTIDLI 109
Query: 666 IDWMNKNNLKANLDK 622
W N L + K
Sbjct: 110 TTWSENNKLPLAVHK 124
>Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical
protein C47A10.9 protein.
Length = 325
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 392 IMDMSPQISDTVYPSGEILVT*IECTLHKSNVFVLCAIFIL*LLV 258
I + +P + +P ILV I+ T +K F L AIFI +++
Sbjct: 160 IFERNPDLLQFDFPESPILVLAIDNTFNKYRQFALIAIFISEIMI 204
>AY013955-1|AAG59937.1| 27|Caenorhabditis elegans LINE-like
reverse transcriptase protein.
Length = 27
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 825 SILGPLLFIIYINDL 781
S+ GPLLFI++INDL
Sbjct: 1 SVSGPLLFILFINDL 15
>AY013956-1|AAG59938.1| 27|Caenorhabditis elegans LINE-like
reverse transcriptase protein.
Length = 27
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -2
Query: 825 SILGPLLFIIYINDL----PEHIHYPC 757
++ GPLLFI+++NDL P I + C
Sbjct: 1 TVTGPLLFILFLNDLLLSIPPSIQFSC 27
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 840 GVPQGSILGPLLFIIYINDLPEHIHYPCSIFADDIAVVITKDATLDLND--KINATVSKV 667
G P+GS +F+++IN L I P +I A I++D + ++ I ++ K+
Sbjct: 950 GAPRGSESRQFMFLVFINSLLCEI--PINISCS--ACAISEDLEIYSHEPIMIEKSLRKI 1005
Query: 666 IDWMNKNNL 640
DW N L
Sbjct: 1006 EDWSTSNKL 1014
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,732
Number of Sequences: 27780
Number of extensions: 390249
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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