Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0045
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        26   0.38 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.1  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 168 YESYGEYCQFNTRYPTKLMLPNINTRYY-HTNCYHMT 61
           +E YG+     T    K M P  N  YY +  CY++T
Sbjct: 189 FEKYGQLFMEETLKAAKRMRPAANWGYYAYPYCYNLT 225


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 480 DLICSKLNRFSYALWRLTKICNLKTALQAYHGYVASN 370
           DL   K N    AL  L  + N+K  L +Y+G +  N
Sbjct: 378 DLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEIN 414


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 234 YYVFGRMVYKKSEDEYC 284
           +Y+  R V++ + ++YC
Sbjct: 346 FYIISRYVFRSALEDYC 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,669
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)