Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0045
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA...    29   2.9  
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ...    29   5.1  

>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
           GI:3021506
          Length = 374

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 270 LTSCKPFFQKHNILTAPSIYIQECCLFVKKHPQLYE 163
           L  C+   +K+  +T   + I  CC+ + K+P L++
Sbjct: 224 LKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFD 259


>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
           O-acetyltransferase [Homo sapiens] GI:17016934
          Length = 540

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 237 YVFGRMVYKKSEDEYCT*HEHIAFVQCTLYLCD*NFPRGVYSI 365
           YV+   +YK     Y   H + +++  T+Y+C  NF   + S+
Sbjct: 390 YVWYECIYKLDRTSYNMYHPYTSWIPITVYICLRNFTHQLRSV 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,533,684
Number of Sequences: 28952
Number of extensions: 336564
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)