Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0044
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.6  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        28   8.7  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 324 DAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNP 455
           D K W+P +  +   P   TEP+ ++P R    G+   AQ  NP
Sbjct: 606 DNKAWHPYHGHTVRAPV-ETEPSYHQPPRGQTNGQATNAQRANP 648


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +3

Query: 234 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAK---EWYPANYTSQALPAYNTEPAPYRP 404
           Q  N    LR+PK +     V ++KS L           P +  S + P     P P RP
Sbjct: 169 QPTNPIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQINMLPEHACSSSHPLTRPIPKPQRP 228

Query: 405 SRPSVQG 425
            +PS  G
Sbjct: 229 PQPSKSG 235


>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 538 VMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVN*SIGEAN 684
           ++ ++T  PG+F+ L   LV ++ + +N++     +   I+  SI E+N
Sbjct: 66  ILDQLTESPGEFENLVEDLVLAWKARVNNDETLNEIASVIMEQSILESN 114


>SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 192 NGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKV 296
           NG ++  +   RG + NN+    RRP+ +++E +V
Sbjct: 282 NGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRV 316


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 183 KMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKS 311
           K     I   KGRGRG  +  +A+E++ P       KVD +K+
Sbjct: 439 KQTESGIHFGKGRGRGSALREKAKEIKNPG--EKLQKVDVTKT 479


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 261 RRPKAVSDEPKVDTSKSK----LSADAKEWYPANY 353
           R+P+A+S +PK+ TS S+    +S +   W P  Y
Sbjct: 316 RKPRAISWQPKLATSASRTPTVVSKEVAVWNPVEY 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,904,111
Number of Sequences: 59808
Number of extensions: 510171
Number of successful extensions: 1249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)