Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0044
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 496 ENMDLRENIANLITVMCEITFDP 564
           +N  LRE +A   T  C    DP
Sbjct: 35  DNPSLREGLAGASTFRCVFVLDP 57


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 280 QTNQRWILLNRSYQQM 327
           QTN+ W+ +N +Y+ +
Sbjct: 438 QTNKTWLPVNENYKSL 453


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 4/17 (23%), Positives = 14/17 (82%)
 Frame = -2

Query: 141 YNSINDFDRYIYFRRHV 91
           YN+ N++++ +Y++ ++
Sbjct: 94  YNNYNNYNKKLYYKNYI 110


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 627 KLYQTLGGCHC 659
           K Y   GGCHC
Sbjct: 239 KWYLPSGGCHC 249


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 301 LLNRSYQQMLKNGTLQITLLK 363
           L  R+Y ++L NGTL +  +K
Sbjct: 757 LRERAYTKILSNGTLLLQHVK 777


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 301 LLNRSYQQMLKNGTLQITLLK 363
           L  R+Y ++L NGTL +  +K
Sbjct: 753 LRERAYTKILSNGTLLLQHVK 773


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,860
Number of Sequences: 438
Number of extensions: 4508
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)