Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0043
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 443 YSSIVENDVT*NATSTTGPVIRSDQE*DHRPS 538
           YS     D+T    STT  V++ ++E ++ PS
Sbjct: 331 YSRQFPRDLTTQTVSTTADVLQEEEE-EYSPS 361


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 628 ERPLTLHHDYD 596
           ER +TLHH YD
Sbjct: 101 ERHITLHHCYD 111


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 628 ERPLTLHHDYD 596
           ER +TLHH YD
Sbjct: 101 ERHITLHHCYD 111


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 298 YVCFRFDLLAIRNC*VVLIRIWIGEIFLYLLSVV 197
           Y C + DLL  R     LI+I+I    L ++S V
Sbjct: 228 YSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWV 261


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 298 YVCFRFDLLAIRNC*VVLIRIWIGEIFLYLLSVV 197
           Y C + DLL  R     LI+I+I    L ++S V
Sbjct: 228 YSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWV 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,912
Number of Sequences: 438
Number of extensions: 4294
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)