Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0042
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      46   3e-05
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_37533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_54026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +2

Query: 122 RGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQXXXXXXXXXXXXXXXXXXXXXXX 301
           RGK  NHKGR R FT  E+L+ + + +++K++WR+ +                       
Sbjct: 66  RGK-PNHKGRRRHFTDEEDLKMELEKEKRKEEWRERRGEISSDDEEEKAESNPAQLKEGD 124

Query: 302 XXXX----HPTKAKGVSGLIEVENPNRVV 376
                      K  GV  LIE+ENPNRV+
Sbjct: 125 SDSASDDDEEAKPTGVQALIEIENPNRVL 153


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 77  LVCSNQITK*NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 229
           L+CS++    NRK    K    K    K    EELEEQR  +EQ+ K +KE
Sbjct: 411 LLCSSE----NRKTVEEKERKKKEEQEKIKREEELEEQRL-EEQRIKMQKE 456


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 457  DRTPASGLQPIRSFTLKVKRSKRALTSLDSPSFANNAKKQLSAER 591
            D+ P+S L P+R  +L  ++    L S   PS  ++ KK   +E+
Sbjct: 1102 DKPPSSPLTPLRELSLNSRKVAEELHSAGLPSSYDSVKKAKVSEK 1146


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 176 ELEEQRKHDEQKKKWRKE 229
           ELEE+RK +E+K+K RK+
Sbjct: 145 ELEEKRKEEEEKEKQRKQ 162


>SB_37533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 466 PASGLQPIRSFTLKVKRSKRALTSLDSPSFANNAKK 573
           PA+     RS ++ +KR  R   S  +P+ A+NAKK
Sbjct: 19  PAANYPSSRSASMSIKRPARPEGSTAAPTAASNAKK 54


>SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +2

Query: 143 KGRNRKFTS-----PEELEEQRKHDEQKKKWRKEQ 232
           KG  RK +S     PE++E  RK DE+K +  KE+
Sbjct: 4   KGLGRKVSSQCYYTPEDIERARKEDEEKAEKAKEE 38


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 98   TK*NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 232
            T+  RK P  K     GR RK    + LEE ++   +K++  KE+
Sbjct: 880  TRQGRKTPAPKQEKSAGRVRKSELTQLLEEVKEKQRRKQRGEKEE 924


>SB_54026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 542 SSEVSARLLRFT---FSVKLLIGCKPLAGVLSPHVHVLTVVVSPH 417
           +S +SA L + T   FSVK L G K   G L+   HV    ++PH
Sbjct: 9   TSNLSANLNKGTQRPFSVKYLFGSKVTYGFLASSRHVNDETLTPH 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,003
Number of Sequences: 59808
Number of extensions: 175782
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)