Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0041
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.012
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.0  
UniRef50_Q9C0Z1 Cluster: Uncharacterized transcriptional regulat...    36   1.0  
UniRef50_A7SLG0 Cluster: Predicted protein; n=1; Nematostella ve...    36   1.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 42.3 bits (95), Expect = 0.012
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 468 FLLLNCVDELTARLVLSGYWSP 533
           FLLL  VDELTA LVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 658 AGWWYLPARTFKRFYHQ 708
           A WWYLPART KR YH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q9C0Z1 Cluster: Uncharacterized transcriptional regulatory
           protein PB24D3.01; n=2; Schizosaccharomyces pombe|Rep:
           Uncharacterized transcriptional regulatory protein
           PB24D3.01 - Schizosaccharomyces pombe (Fission yeast)
          Length = 594

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 241 RIYERTQLTKAKTIYKDLYTNSE---FWMKVLVTCSRYYFCVVIDVGQIYQEQNFN*KKS 411
           ++Y RT  + A+   K ++   E    W + L    R YF  + +  QIY+E +F  ++ 
Sbjct: 388 KVYSRTNTSNARNREKAIWQIHEKLLCWERALPIELRQYFIALTENAQIYEELDFEKQRL 447

Query: 412 FTIK*IEVFFKICGVRFF 465
           F+   IEV+   C    F
Sbjct: 448 FSAC-IEVYLSYCNTLIF 464


>UniRef50_A7SLG0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 289

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 503 PPGVKWLLEPIGVYNVSAPHTLRH--KF*GLKYRLQRLPHLSNRNALLLYGRNKRGGGTY 676
           P G+   LE +GV +V+A H   H  K  G+   L+  P+  NR  +LL        G  
Sbjct: 139 PSGLYLTLESLGVKDVNADHAASHVGKAFGIVTLLRATPYHGNRGKVLLPNDILIKHGVS 198

Query: 677 PRGLSRGSTTSKIK 718
            + + RGST+  +K
Sbjct: 199 HQDIIRGSTSQPVK 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,299,436
Number of Sequences: 1657284
Number of extensions: 14873067
Number of successful extensions: 31037
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31026
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)