Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0041
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476...    29   3.7  
11_06_0244 + 21652030-21652302,21652478-21652645,21652993-21653169     28   6.5  
11_06_0243 + 21648049-21648318,21648492-21648668                       28   6.5  
03_06_0755 - 36029836-36030123,36030352-36030444,36030601-360306...    28   6.5  
03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347...    28   6.5  
01_01_0819 - 6387000-6387300,6387685-6387843,6387925-6388100,638...    28   6.5  
06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319...    28   8.6  

>01_01_0633 -
           4767914-4768020,4768057-4768085,4768590-4768745,
           4768835-4768983,4769106-4769638,4769900-4770068,
           4770255-4770347,4770641-4770698,4771392-4771471,
           4771548-4771715,4772090-4772242,4772756-4772884,
           4772996-4773085,4773990-4774129,4774683-4774814,
           4774916-4775087
          Length = 785

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 172 TLCPRGHHKLANCECHSQLTSPFDG 98
           TL     H+ + C  H +L+SPFDG
Sbjct: 754 TLLRHNFHEGSECNSHDKLSSPFDG 778


>11_06_0244 + 21652030-21652302,21652478-21652645,21652993-21653169
          Length = 205

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 197 FHLVRPERNIMSTRSPQIGQLRVSFSIDKPVRWMQGPYG 81
           +H  RP  N     +P +     ++  DKP+ W Q  YG
Sbjct: 33  YHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQ-KYG 70


>11_06_0243 + 21648049-21648318,21648492-21648668
          Length = 148

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 266 VSWVLSYILKMNTKTVFVMLSMQFHLVRPERNIMSTRSPQIGQLRVSFSIDKPVRWMQGP 87
           V+ VL  ++ M T      +   +H  RP +N     +P +     ++  +KP+ W Q  
Sbjct: 9   VAAVLCAVVAMVTAQEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQ-K 67

Query: 86  YG 81
           YG
Sbjct: 68  YG 69


>03_06_0755 -
           36029836-36030123,36030352-36030444,36030601-36030676,
           36030755-36030880,36030957-36031013,36031132-36031253
          Length = 253

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 527 PVTT*HQAGRELVHTIKQ*KKKNRTPQILKKTSIHLIVK 411
           P+T  H+A  +L+  + Q K  N TP++++KT  ++ V+
Sbjct: 114 PITK-HEAINQLIQVVTQTKPDNFTPRLVEKTDDYVRVE 151


>03_01_0453 -
           3471656-3471819,3472416-3472580,3473062-3473145,
           3473304-3473375,3473496-3473574,3473894-3473990,
           3474064-3474116,3474257-3474386,3474464-3474498,
           3476108-3476212,3476759-3476833,3477671-3477799,
           3477918-3478097,3478737-3478820,3478943-3479059,
           3479170-3479242,3479316-3479437,3479519-3479641,
           3479917-3479989,3480218-3480396,3480699-3480837,
           3481105-3481259,3481570-3481875
          Length = 912

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 253 FHISSK*TLKLYS*CYQCNFISYDQKET 170
           F +SS+ T+K+    YQ  FISY + ET
Sbjct: 420 FRMSSEHTMKVAEELYQAGFISYPRTET 447


>01_01_0819 -
           6387000-6387300,6387685-6387843,6387925-6388100,
           6389293-6389476,6389565-6389875
          Length = 376

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 398 LKFCSWYIWPTSITTQK**REQVTKTFIQNSEFVYKSL*IVFAFVSWVLSYILKMNTKTV 219
           L F SW+ WP S  TQ     Q   T +++ +        +  +  WV + +L+ NT+  
Sbjct: 208 LVFDSWHWWPRSGPTQPWDYIQEGNTVVKDMDRTEAFSKALNTWARWVDANLLQTNTRVF 267

Query: 218 FVMLS 204
           F  +S
Sbjct: 268 FQGIS 272


>06_01_0451 +
           3194919-3195416,3195560-3195580,3196282-3196467,
           3197272-3197556
          Length = 329

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 445 ICGVRFFFFYCLIVWTSSRP 504
           +C V  F  +CLI+W ++RP
Sbjct: 139 LCFVLLFTVFCLIIWGAARP 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,789,648
Number of Sequences: 37544
Number of extensions: 408570
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)