Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0041
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)               31   1.2  
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 28   6.7  
SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)           28   8.8  
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    28   8.8  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)
          Length = 644

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 196 NCIDNITNTVLVFILRIYERTQLTKAKTIYKDLYTNSEFWMKVLVTCSRY 345
           NC +++ NT L F +R  E T   K+KTI   L  NS+  +   + C +Y
Sbjct: 587 NCRNSL-NTFLEFGIRRKESTVCRKSKTIALKLCRNSDAEISARLNCRKY 635


>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 593  YRLQRLPHLSNRNALLLYGRNKRGGGTYPR--GLSRGST 703
            YRL  L H +N N L  +GRNK  G  +PR  G+SR +T
Sbjct: 953  YRLFML-HYTNLN-LNHWGRNKPSGSDHPRIAGISRSTT 989


>SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 223 VLVFILRIYERTQLTKAKTIYKDLYTNSEFWMKVLVTCSRYYFCVVIDVGQIY 381
           V + +  IY     TK    +     + E     L T SRY F V IDV  IY
Sbjct: 402 VTIDVTSIYTNIATTKMLLPFIPTSPHDEGIQSALSTISRYSFLVTIDVTSIY 454


>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 686

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 222 SFSVHFEDI*KDPANKSEDNLQGFVHEFGILDES 323
           SF+ HFE+I + P N++E     F + FG + ES
Sbjct: 363 SFTNHFEEIPESPTNRAE----SFTNHFGEIPES 392


>SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 296 YKSL*IVFAFVSWVLSYILKMNTKTVFVMLSMQFHLVR 183
           + SL   + +V+WVL ++L   +  V ++  MQF  V+
Sbjct: 440 HSSLPYYWVYVAWVLVFLLTTASAIVVILYGMQFKNVK 477


>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 199 NFISYDQKETLCPRGHHKLANCEC 128
           NF  +  ++T  PRGHH +AN +C
Sbjct: 798 NFTQHASEDTT-PRGHHSVANEQC 820


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 442 KICGVRFFFFYCLIVWTS 495
           +IC V   F+YC  VW+S
Sbjct: 60  RICSVHLDFYYCTCVWSS 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,887,534
Number of Sequences: 59808
Number of extensions: 483924
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)