Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0037
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0882 - 8495717-8495761,8496414-8496860 33 0.31
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 31 0.73
06_03_0615 - 22761375-22761760,22762218-22765026 31 0.73
07_03_0331 - 16878602-16879054 30 1.7
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 30 2.2
03_06_0713 - 35687672-35689219 30 2.2
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 2.9
05_04_0090 + 17833897-17834364 29 3.9
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 29 3.9
06_01_0486 - 3455030-3455770 29 5.1
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 29 5.1
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242... 29 5.1
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 28 6.8
10_08_1037 - 22477358-22478752 28 6.8
09_02_0603 - 11150739-11150746,11150791-11151340 28 6.8
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 28 6.8
11_06_0264 - 21785450-21786928 28 9.0
08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264 28 9.0
05_03_0032 - 7582595-7582690,7582879-7583004,7583119-7583185,758... 28 9.0
>12_01_0882 - 8495717-8495761,8496414-8496860
Length = 163
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 211 ARCRGATNSASPGGTAADHLRAEPVPGDQQSGPQPTALLDSYLQNPTCIESL 56
AR RGA + GG A R P P ++S P P+A + PT + L
Sbjct: 82 ARGRGAAGARRRGGLLAALDRRRPAPPPRRSRPPPSAEASDARRQPTVVRGL 133
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 129 SPGTGSARRWSAAVPPGLAEFVAPLQRAGLCLLAHQPHAVGAWTVYMGR--ASPLTAARP 302
+P T S +AA P AP A + + +PH ++ PLTAA+P
Sbjct: 322 NPATASTSAPAAATSPA----AAPTAAARTAVASPEPHRPSSFAALFAAPLGFPLTAAQP 377
Query: 303 RPTYPAT 323
RP PA+
Sbjct: 378 RPPPPAS 384
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 199 PCSGRGCVCSHTSRTRSARGPCTWAERPRLPPPVPDRHILQL 324
PCS +G CS SR S P T+ LPP + LQL
Sbjct: 58 PCSWQGVTCSPQSRVVSLSLPNTFLNLSSLPPQLASLSSLQL 99
>07_03_0331 - 16878602-16879054
Length = 150
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = -2
Query: 328 YVVAGYVGRGRAAVS-GDARPMYTVHAPTACGWCASRHSPARCRGATNSASPGGTAADHL 152
+ A VG R AV+ G + AP GWC SRH A GG A L
Sbjct: 59 WCAAAIVGGHRGAVADGGGSQLGADAAPY--GWCMSRHQEAAAAAEEEEEEGGGGAGGEL 116
Query: 151 RAE 143
E
Sbjct: 117 ATE 119
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -2
Query: 316 GYVGRGRAAVSGDARPMYTVHAPTACGWCASRHSPARCRGATNSASPGGTAADHLRA-EP 140
G G+ +A+ + DA PM ++ +P+ AS SP+ N SP AD+ P
Sbjct: 10 GKKGKSKASTTADASPM-SLSSPSTVD--ASSKSPSSPSTEENGTSPAHHQADNAPVIAP 66
Query: 139 VPGDQQSGPQP 107
P + + P+P
Sbjct: 67 PPVPEPAPPEP 77
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 247 TACGWCASRHS--PARCRGATNSASPGGTAADHLRAEPVPGDQQSGPQPTALLDSY--LQ 80
T C R S PAR RG + P AA LRA P P Q + + + L S+ L
Sbjct: 10 TTCAIQRRRRSTAPARRRGPPSRRHPHSGAALTLRAAPPPATQPTLDRVLSDLGSHPRLL 69
Query: 79 NPTCIESL*LFLP 41
P ++SL LP
Sbjct: 70 TPDLLDSLLAALP 82
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 196 PPCSGRGCVCSH-TSRTRSARGPCTWAERPRLPPPVPDRHIL 318
PP +G V + T T++A P T A P P +PD L
Sbjct: 224 PPQAGAEAVTTESTEATQAANPPATTASNPHQAPVIPDEETL 265
>05_04_0090 + 17833897-17834364
Length = 155
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = -2
Query: 319 AGYVGRGRAAVSGDARPMYTVHAPTACGWCASRHSPARCRGATNSASPGGTAADHLRAEP 140
+G G GR A GDAR H T +RH R R +N + R+ P
Sbjct: 47 SGAAGVGRGA-GGDARRGVGRHRQTWSEAAGARHGAGRVRARSNDGEATRSTVRLRRSLP 105
Query: 139 VPGD 128
P D
Sbjct: 106 APRD 109
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 45 RNSYNDSIHVGFCRYESRRAVGWGPDC*SPGTGSARRWSAA 167
R D G C +E RA W DC +PG G + R+S++
Sbjct: 119 RGGRGDGPPPGNC-FECGRAGHWARDCPNPGGGRSARYSSS 158
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 102 AVGWGPDC*SPGTGSARRWSAAVPPG 179
A GW DC PG+GS+ PPG
Sbjct: 20 AHGWNKDCPPPGSGSSGGGHHGKPPG 45
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 223 RHSPARCRGATNSASPGGTAADHLRAEPV-PGDQQSGPQPTALLD 92
+H + GA SASP A R + P + S P+P +LLD
Sbjct: 28 KHQASSSSGAAASASPPSPPAKRQRGDDAAPKGRGSKPKPASLLD 72
>01_06_0614 +
30621495-30621670,30621817-30622036,30623848-30624270,
30624523-30624906,30624991-30625086,30625161-30625276,
30625431-30625598,30625685-30625844,30625999-30626196,
30626304-30626432,30626595-30626673,30627010-30627119
Length = 752
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 568 IIVYSDCLRFVLFDVFAILYEETLLISLCIPVCMYVSRMYIGMYVCLSYVYR 723
+IV+ +CL + + Y T + L +PVC+YV + + SY R
Sbjct: 384 LIVHGECLYLI-----HVWYRRTTWMYLSVPVCLYVGERILRFFRSGSYSVR 430
>12_02_1091 -
26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 238 GWCASRHSPARCRG-ATNSAS 179
GWC+ RH A C G T SAS
Sbjct: 57 GWCSDRHQVASCSGDQTQSAS 77
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 223 RHSPARCRGATNSASPGGTAADHLRAEPVPGDQQSGPQPTAL 98
RHSPA RG ASP H P+P Q P+P ++
Sbjct: 227 RHSPAAHRGDPLPASPPQPQHQHHPHRPLPPQHQQ-PKPPSM 267
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1
Query: 128 SAVRPPANRPPRL 90
SA RPPA+RPPRL
Sbjct: 18 SAARPPASRPPRL 30
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -2
Query: 316 GYVGRGRAAVSGDARPMYTVHAPTACGWCASRHSPARCRGATNSASPGGTAADHLRA-EP 140
G G+ +A+++ DA PM + +P+ AS SP+ N SP AD+ P
Sbjct: 10 GKKGKLKASITADASPM-SPSSPSTVD--ASSKSPSSPSTEENGTSPAHHQADNAPVIAP 66
Query: 139 VPGDQQSGPQP 107
P + + P+P
Sbjct: 67 PPVPEPAPPEP 77
>11_06_0264 - 21785450-21786928
Length = 492
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 199 GATNSASPGGTAADHLRAEPVPGDQQSGPQPTALL 95
GA +S+SP A L + P P SGP+PT L
Sbjct: 301 GAASSSSPSPVARTVL-SSPSPHQYSSGPKPTQYL 334
>08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264
Length = 661
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 596 LSCLMSLLFS---TRKLCLYRYVYRYVCMSLVCISACMYVSRMYIGMYVCL 739
L +SLL+S +R++ + RYVY+ + + ++ SA V+ +GMYV L
Sbjct: 533 LLATVSLLYSGMPSREISI-RYVYQSLSLVMMRSSATSLVAAFALGMYVVL 582
>05_03_0032 -
7582595-7582690,7582879-7583004,7583119-7583185,
7583268-7583470
Length = 163
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 316 GYVGRGRAAVSGDARPMYTVHAPTAC--GWCASRHSPARCRGATNSASPGGTAADHLRAE 143
GY GRG SG++ Y+ PT GW A+R G + GG A L AE
Sbjct: 35 GYGGRGPRGCSGESPRGYSNSKPTGTVEGWVAARLGKWVACGGDDG---GGFAKCLLDAE 91
Query: 142 PVP 134
VP
Sbjct: 92 FVP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,851,796
Number of Sequences: 37544
Number of extensions: 431052
Number of successful extensions: 1564
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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