Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0035
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 31 0.88
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 31 0.88
Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 29 4.7
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 29 4.7
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 28 6.2
U23511-1|AAC46791.1| 859|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 28 8.2
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 31.1 bits (67), Expect = 0.88
Identities = 25/101 (24%), Positives = 44/101 (43%)
Frame = +1
Query: 34 KLLEVKEKLKISVSIGATVGRIRAIILEHTLSIPTAVDEMEKKELRTSATETGLNSKIGI 213
+L +++++ K V + + ++LE +++ +DEM K + GLN KI
Sbjct: 410 QLEKIQKENKTIVKENVYLSESKQVLLESEINLKNELDEMAVKLRNSQHQVAGLNEKISE 469
Query: 214 RGTDRLEILSNVAVFDESLSDTGGREKCLLRAHKSVSLTEE 336
R + ++V DE +K L A S L EE
Sbjct: 470 EKRRRKKQDADVTRLDEQ------NQKLLREAQDSAELLEE 504
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 31.1 bits (67), Expect = 0.88
Identities = 25/101 (24%), Positives = 44/101 (43%)
Frame = +1
Query: 34 KLLEVKEKLKISVSIGATVGRIRAIILEHTLSIPTAVDEMEKKELRTSATETGLNSKIGI 213
+L +++++ K V + + ++LE +++ +DEM K + GLN KI
Sbjct: 410 QLEKIQKENKTIVKENVYLSESKQVLLESEINLKNELDEMAVKLRNSQHQVAGLNEKISE 469
Query: 214 RGTDRLEILSNVAVFDESLSDTGGREKCLLRAHKSVSLTEE 336
R + ++V DE +K L A S L EE
Sbjct: 470 EKRRRKKQDADVTRLDEQ------NQKLLREAQDSAELLEE 504
>Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical
protein T08D10.2 protein.
Length = 737
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 1 GSAAAGFQESGKLLEVKEKLKISVSIGATVGRIRAIILEHTLSIPTAVD---EMEKKELR 171
G+ AAG + +LL + + + G T GR+R++I +H I T D +++ +
Sbjct: 181 GAGAAGIAAATQLLTFGFDVAVVEASGLTGGRVRSLISKHGELIETGCDSLRNLDESVIT 240
Query: 172 TSATETGLNSKI 207
T + LN I
Sbjct: 241 TLLHQVPLNENI 252
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 199 SKIGIRGTDRLEILSNVAVFDESLS------DTGGREKCLLRAHKSVSLTEETGVLPMPT 360
+K IRG D E V ++ S DTG R +C+L+ H+SV T LP PT
Sbjct: 50 TKSSIRGVDLDEHKKRVYAVTKNRSLCVFDIDTGKRVRCILKCHRSVPTAICT--LP-PT 106
Query: 361 DLRNLQV 381
L++ Q+
Sbjct: 107 ALKSQQL 113
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 199 SKIGIRGTDRLEILSNVAVFDESLS------DTGGREKCLLRAHKSVSLTEETGVLPMPT 360
+K IRG D E V ++ S DTG R +C+L+ H+SV T LP PT
Sbjct: 50 TKSSIRGVDLDEHKKRVYAVTKNRSLCVFDIDTGKRVRCILKCHRSVPTAICT--LP-PT 106
Query: 361 DLRNLQV 381
L++ Q+
Sbjct: 107 ALKSQQL 113
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 34 KLLEVKEKLKISVSIGATVGRIRAIILEHTLSIPTAVDEMEKKELRTSATETGLNSKIGI 213
KLLEV E+ ++ + I +I I+ + + + + E + +T +NS + +
Sbjct: 331 KLLEVSEEKELGLGINV---KISFCIISALFELNAKISDHMEYETFMTTLQT-VNSLLDL 386
Query: 214 R-GTDRLEILSNVAVFDESLSD 276
GTDR+++ A DE+L D
Sbjct: 387 LIGTDRVKLSVTYAEEDENLKD 408
>U23511-1|AAC46791.1| 859|Caenorhabditis elegans Hypothetical
protein C32D5.3 protein.
Length = 859
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 149 SSTAVGIDNVCSKMIALILPTVAPILTDIFN 57
+ST +GI V S ++++ ++ P+L IFN
Sbjct: 322 ASTRIGIATVLSSIVSIAGTSIGPLLLSIFN 352
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -3
Query: 191 PVSVADVRNSFFSISSTAVGIDNVCSKMIALILPTVAPILTDIFNFSFTSSNFPDSWK 18
P + V SF + A G D + + + V ++TD FN S N P WK
Sbjct: 549 PEEIRHVLRSF--PNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWK 604
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -3
Query: 191 PVSVADVRNSFFSISSTAVGIDNVCSKMIALILPTVAPILTDIFNFSFTSSNFPDSWK 18
P + V SF + A G D + + + V ++TD FN S N P WK
Sbjct: 288 PEEIRHVLRSF--PNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWK 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,440
Number of Sequences: 27780
Number of extensions: 359838
Number of successful extensions: 1008
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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