Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0026
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 227 6e-60
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 227 1e-59
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 1e-44
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 3e-43
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 146 1e-35
SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 110 1e-24
SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18) 106 2e-23
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 4e-20
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13) 53 2e-07
SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11) 44 1e-04
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34) 33 0.32
SB_21327| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 5.3
SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12) 29 5.3
SB_11883| Best HMM Match : I-set (HMM E-Value=0) 28 9.2
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 725
Score = 227 bits (556), Expect = 6e-60
Identities = 103/190 (54%), Positives = 138/190 (72%), Gaps = 3/190 (1%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHL 563
PLTGM + T++QL++DHFLFK+GDRF+ AA + WP GRGI+HN KTFLVW NEED L
Sbjct: 157 PLTGMDEVTREQLVNDHFLFKKGDRFLDAAGCNKEWPEGRGIFHNNEKTFLVWVNEEDQL 216
Query: 562 RIISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXX 383
RIISM+MG D+ V+ RL AVNE++KK+ F H G+LT CPTNLGT +RASVH+
Sbjct: 217 RIISMEMGSDIGSVFSRLCRAVNELDKKLGFQHTKSHGYLTSCPTNLGTGMRASVHV-KI 275
Query: 382 XXXXXXXXLEEVASKYHLQVRGTRGEHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDG 212
+++ K+H+Q RG GEH+E+ G GVYDISNKRR+GL+E V++MY+G
Sbjct: 276 PHAKDHPEFDKICEKFHIQARGIHGEHSESTGEDAGVYDISNKRRLGLSEVQCVQDMYNG 335
Query: 211 IAELIKIEKS 182
+ L++IE++
Sbjct: 336 VKSLLEIERA 345
Score = 226 bits (552), Expect = 2e-59
Identities = 101/190 (53%), Positives = 140/190 (73%), Gaps = 3/190 (1%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHL 563
PLTGM + T+Q+L+DDHFLFK+GDRF++AA + WP GRGI+HN +KTFLVW NEED L
Sbjct: 536 PLTGMDEATRQKLVDDHFLFKKGDRFLEAAGVNKLWPEGRGIFHNNDKTFLVWINEEDQL 595
Query: 562 RIISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXX 383
RIISM+ G D+ V+ RL AVNE++KK+ F H D G+L+ CPTNLGT +RASVH+
Sbjct: 596 RIISMEKGSDIGSVFSRLCRAVNELDKKLGFQHTDAHGYLSGCPTNLGTGMRASVHV-KI 654
Query: 382 XXXXXXXXLEEVASKYHLQVRGTRGEHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDG 212
+++ ++H+Q RG GEH+ + G GV+DISNKRR+GL+E V++MY+G
Sbjct: 655 PKASEHPDFQKICDEFHIQARGIHGEHSVSTGEDAGVFDISNKRRLGLSEVQCVQDMYNG 714
Query: 211 IAELIKIEKS 182
+ +L++IEK+
Sbjct: 715 VKKLLEIEKA 724
>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 969
Score = 227 bits (554), Expect = 1e-59
Identities = 101/190 (53%), Positives = 142/190 (74%), Gaps = 3/190 (1%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHL 563
PL+GM + T+QQL+DDHFLFK+GDRF++AA + WP GRGI+HN +KTFLVW NEED L
Sbjct: 781 PLSGMDEATRQQLVDDHFLFKKGDRFLEAAGVNKMWPEGRGIFHNNDKTFLVWVNEEDQL 840
Query: 562 RIISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXX 383
RIISM+MG D+ V+ RL AVNEI+K++ F+H + G+L+ CPTNLGT +RASVH+
Sbjct: 841 RIISMEMGSDIGSVFSRLCRAVNEIDKQLGFAHKETHGYLSGCPTNLGTGMRASVHV-KI 899
Query: 382 XXXXXXXXLEEVASKYHLQVRGTRGEHTEAEG---GVYDISNKRRMGLTEYDAVKEMYDG 212
+++ ++H+Q RG GEH+ + G GV+DISNKRR+GL+E V++MY+G
Sbjct: 900 PKASEHPDFQKICDEFHIQARGIHGEHSVSTGEDAGVFDISNKRRLGLSEVQCVQDMYNG 959
Query: 211 IAELIKIEKS 182
+ +L++IEK+
Sbjct: 960 VKKLLEIEKA 969
Score = 216 bits (527), Expect = 2e-56
Identities = 98/186 (52%), Positives = 136/186 (73%), Gaps = 3/186 (1%)
Frame = -3
Query: 730 MSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIIS 551
M + T+QQL+DDHFLFK+GDRF++AA R WP GRGI+HN +KTFLVW NEED LRIIS
Sbjct: 1 MDEATRQQLVDDHFLFKKGDRFLEAAGVNREWPEGRGIFHNNDKTFLVWVNEEDQLRIIS 60
Query: 550 MQMGGDLQQVYKRLVSAVNEIEKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXX 371
M+MG D+ V++RL +AVNE++ K+ F G+L+ CPTNLGT +RASVH+
Sbjct: 61 MEMGSDIGSVFRRLCTAVNELDNKLGFQQLPGHGYLSSCPTNLGTGMRASVHV-KIPHAS 119
Query: 370 XXXXLEEVASKYHLQVRGTRGEH---TEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAEL 200
+++ ++H+Q RG GEH T A+ GV+DISNKRR+GL+E V++MY+G+ +L
Sbjct: 120 AHPDFQKICDEFHIQARGIHGEHSVSTGADAGVFDISNKRRLGLSEVQCVQDMYNGVKKL 179
Query: 199 IKIEKS 182
++IEK+
Sbjct: 180 LEIEKA 185
Score = 194 bits (474), Expect = 5e-50
Identities = 87/168 (51%), Positives = 123/168 (73%), Gaps = 3/168 (1%)
Frame = -3
Query: 676 GDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAV 497
GDRF++AA + WP GRGI+HN +KTFLVW NEED LRIISM+MG D+ V+KRL +AV
Sbjct: 451 GDRFLEAAGVNKLWPEGRGIFHNNDKTFLVWVNEEDQLRIISMEMGSDIGSVFKRLCTAV 510
Query: 496 NEIEKKIPFSHHDRLGFLTFCPTNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRG 317
NEI+K++ F H + G+L+ CPTNLGT +RASVH+ +++ ++H+Q RG
Sbjct: 511 NEIDKQLGFQHTEEHGYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARG 569
Query: 316 TRGEH---TEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 182
GEH T A+ GV+DISNKRR+GL+E V++MY+G+ +L++IE++
Sbjct: 570 IHGEHSVSTGADAGVFDISNKRRLGLSEVQCVQDMYNGVKKLLEIERA 617
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLFKE 677
PL GM++ET+QQL++DHFLFK+
Sbjct: 349 PLDGMTEETRQQLVNDHFLFKK 370
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 177 bits (430), Expect = 1e-44
Identities = 89/194 (45%), Positives = 121/194 (62%), Gaps = 6/194 (3%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLF-KEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDH 566
PL M+ E Q+QLI+DHFLF K + A R WP RGI+HNENK FLVW NEEDH
Sbjct: 2467 PLNKMTDEEQEQLINDHFLFDKPVSPLLTCAGMARDWPDARGIWHNENKNFLVWVNEEDH 2526
Query: 565 LRIISMQMGGDLQQVYKRLVSAVNEIEKKI-----PFSHHDRLGFLTFCPTNLGTTVRAS 401
R+ISM+ GGD++ V+ R + +N++E I F ++ LG++ CP+NLGT +RA
Sbjct: 2527 TRVISMEKGGDMRAVFTRFCNGLNKVESLIKEAGYEFMWNEHLGYVLTCPSNLGTGLRAG 2586
Query: 400 VHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEM 221
VH+ L+ + +K LQ RGT G T + GGVYDISN R+G +E + V+ M
Sbjct: 2587 VHLKIPLLSQDEKRLDAILAKLKLQKRGTGGVDTASVGGVYDISNADRIGFSEVELVQGM 2646
Query: 220 YDGIAELIKIEKSL 179
DG+ LI++EK L
Sbjct: 2647 VDGVGLLIEMEKRL 2660
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 172 bits (418), Expect = 3e-43
Identities = 88/194 (45%), Positives = 117/194 (60%), Gaps = 6/194 (3%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLF-KEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDH 566
PL GMS QQQLIDDHFLF K + A R WP RGI+HN++K FL+W NEEDH
Sbjct: 207 PLNGMSDAQQQQLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNDSKNFLIWVNEEDH 266
Query: 565 LRIISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHD-----RLGFLTFCPTNLGTTVRAS 401
R+ISMQ GGD++ V+ R +N++E I H+ LG++ CP+NLGT +RA
Sbjct: 267 TRVISMQQGGDMRSVFDRFCRGLNQVEGLIKKKGHEFMWNQHLGYILTCPSNLGTGLRAG 326
Query: 400 VHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEM 221
VH+ L+ + K LQ RGT G T A GG +DISN R+G +E + V+++
Sbjct: 327 VHV-KLPNLGKDKRLDTILDKLRLQKRGTGGVDTAAVGGTFDISNSDRLGYSEVELVQKV 385
Query: 220 YDGIAELIKIEKSL 179
DG+ LI +EK L
Sbjct: 386 IDGVNLLIDMEKRL 399
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 167 bits (407), Expect = 6e-42
Identities = 84/194 (43%), Positives = 119/194 (61%), Gaps = 6/194 (3%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLF-KEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDH 566
PL+ M+ Q QLIDDHFLF K + A+ R WP RGI+HN+NKTFLVW NEEDH
Sbjct: 146 PLSNMTAAEQDQLIDDHFLFDKPVSPLLLASRMARDWPDARGIWHNDNKTFLVWVNEEDH 205
Query: 565 LRIISMQMGGDLQQVYKRLVSAVNEIEKKI-----PFSHHDRLGFLTFCPTNLGTTVRAS 401
R+ISMQ GG++++V+ R + +N++EK I F + LG++ CP+NLGT +R
Sbjct: 206 TRVISMQKGGNMKEVFTRFCNGLNKVEKAIKSKGREFMWNKHLGYVLTCPSNLGTGLRGG 265
Query: 400 VHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEM 221
VH+ + + LQ RGT G T + G +DISN R+G +E + V+++
Sbjct: 266 VHV-KLPLLSKEPRFDSILRTLRLQKRGTGGVDTASTDGTFDISNLDRLGTSEVEQVQKV 324
Query: 220 YDGIAELIKIEKSL 179
DG+ LI+IEK+L
Sbjct: 325 IDGVKALIEIEKAL 338
Score = 159 bits (386), Expect = 2e-39
Identities = 79/193 (40%), Positives = 117/193 (60%), Gaps = 6/193 (3%)
Frame = -3
Query: 739 LTGMSKETQQQLIDDHFLF-KEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHL 563
L M++ Q QLIDDHFLF K + A+ R WP RGI+HN+NKTFLVW NEEDH
Sbjct: 516 LMTMTEAEQDQLIDDHFLFDKPVSPLLLASRMARDWPDARGIWHNDNKTFLVWVNEEDHT 575
Query: 562 RIISMQMGGDLQQVYKRLVSAVNEIE-----KKIPFSHHDRLGFLTFCPTNLGTTVRASV 398
R+ISMQ GG++++V+ R + +N++E K F ++ LG++ CP+NLGT +R V
Sbjct: 576 RVISMQKGGNMKEVFARFCNGLNKVESLIKSKGYEFMWNEHLGYVLTCPSNLGTGLRGGV 635
Query: 397 HIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEMY 218
H+ + + LQ RGT G T + G +DISN R+G +E + V+ +
Sbjct: 636 HV-KLPLLSARDDFDSLLKALRLQKRGTGGVDTASTDGTFDISNADRLGTSEVEQVQTVV 694
Query: 217 DGIAELIKIEKSL 179
DG+ ++++EK+L
Sbjct: 695 DGVKLMVELEKAL 707
Score = 155 bits (375), Expect = 5e-38
Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 6/201 (2%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLF-KEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDH 566
PL+ M+ Q+QLI+DHFLF K + +A R WP RGI+HN+ K FLVW NEEDH
Sbjct: 912 PLSKMTDAEQEQLINDHFLFDKPVSPLLLSARMARDWPDARGIWHNDAKNFLVWVNEEDH 971
Query: 565 LRIISMQMGGDLQQVYKRLVSAVNEIE-----KKIPFSHHDRLGFLTFCPTNLGTTVRAS 401
R+ISMQ GG++++V+ R + + +IE K F + LG++ CP+NLGT +R
Sbjct: 972 TRVISMQQGGNMREVFHRFCNGLKKIEDAMKAKGKEFMWDEHLGYVLTCPSNLGTGLRGG 1031
Query: 400 VHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVKEM 221
VH+ + + K LQ RGT G T + G +DISN R+G +E V+++
Sbjct: 1032 VHV-KLPMVSKDARFDGILEKLRLQKRGTGGVDTASTDGTFDISNLDRIGFSEVQLVQKV 1090
Query: 220 YDGIAELIKIEKSL*APPRAD 158
DG+ L+++EK L A D
Sbjct: 1091 IDGVKILVEMEKKLMAGQSID 1111
>SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 309
Score = 146 bits (355), Expect = 1e-35
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Frame = -3
Query: 736 TGMSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRI 557
T M+ E +Q+L+DDHFLF+ D+ A+ FWP GRGI+ N+ KTFL W NE DHLRI
Sbjct: 108 TTMTDEERQKLVDDHFLFRGKDKMQAASGYHEFWPEGRGIFINKAKTFLNWINEGDHLRI 167
Query: 556 ISMQMGGDLQQVYKRLVSAVNEIE--------KKIPFSHHDRLGFLTFCPTNLGTTVRAS 401
ISM+MGGD++ V+ RL IE K F H G +T CPTN+GT +R S
Sbjct: 168 ISMEMGGDVKGVFTRLSRGAKAIEDGVKEATGAKDAFMMHPTFGSVTCCPTNIGTGMRGS 227
Query: 400 VHI--XXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVK 227
VHI ++++ + + Q RG+ GEH+E + D+SN RR+G EY V
Sbjct: 228 VHILVPKLIAKIGFDAIDKICRERNCQARGSTGEHSEVIDRI-DVSNWRRIGFPEYQLVD 286
Query: 226 EMYDGIAELIKIEKSL 179
+M + L + E L
Sbjct: 287 DMIQCVNFLAEEEDKL 302
>SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 383
Score = 110 bits (264), Expect = 1e-24
Identities = 72/196 (36%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Frame = -3
Query: 736 TGMSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRI 557
T M+ E +Q+L+DDHFLF+ ++ N+ KTFL W NE DHLRI
Sbjct: 200 TTMTDEERQKLVDDHFLFRSR------------------VFINKAKTFLNWINEGDHLRI 241
Query: 556 ISMQMGGDLQQVYKRLVSAVNEIE--------KKIPFSHHDRLGFLTFCPTNLGTTVRAS 401
ISM+MGGD++ V+ RL IE K F H G +T CPTN+GT +R S
Sbjct: 242 ISMEMGGDVKGVFTRLSRGAKAIEDGVKEATGAKDAFMMHPTFGSVTCCPTNIGTGMRGS 301
Query: 400 VHI--XXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYDISNKRRMGLTEYDAVK 227
VHI ++++ + + Q RG+ GEH+E + D+SN RR+G EY V
Sbjct: 302 VHILVPKLIAKIGFDAIDKICRERNCQARGSTGEHSEVIDRI-DVSNWRRIGFPEYQLVD 360
Query: 226 EMYDGIAELIKIEKSL 179
+M + L + E L
Sbjct: 361 DMIQCVNFLAEEEDKL 376
>SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18)
Length = 138
Score = 106 bits (255), Expect = 2e-23
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Frame = -3
Query: 739 LTGMSKETQQQLIDDHFLFKEGDR-FMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHL 563
L+ M+ + L +H L + ++ R WP GRG++H ++K+FL+W NEEDHL
Sbjct: 10 LSSMTPQDYHHLSLEHVLSDATKHPLIVSSGMSRDWPDGRGVWHTKDKSFLIWVNEEDHL 69
Query: 562 RIISMQMGGDLQQVYKRLVSAVNEIEKKI-----PFSHHDRLGFLTFCPTNLGTTVRASV 398
R+ISM+ GGDL++ Y+R + E+E +I F + LG++ CP+NLGT +RASV
Sbjct: 70 RVISMETGGDLERTYERFYRGLKELESRIQKFGHEFMRNRHLGYINTCPSNLGTGLRASV 129
Query: 397 HI 392
H+
Sbjct: 130 HV 131
>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 95.5 bits (227), Expect = 4e-20
Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = -3
Query: 742 PLTGMSKETQQQLIDDHFLF-KEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDH 566
PL M+ E Q+QLI+DHFLF K + A R WP RGI+HN+NK FLVW NEEDH
Sbjct: 548 PLGKMTNEEQEQLINDHFLFDKPVSPLLTCAGMARDWPDARGIWHNKNKNFLVWVNEEDH 607
Query: 565 LRIISMQMGGDLQQVYK 515
R+ISMQ GGD++ V++
Sbjct: 608 TRLISMQKGGDMRAVFE 624
>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
Length = 490
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Frame = -3
Query: 739 LTGMSKETQQQLIDDHFLFKEGDRFMQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLR 560
L +S +++ LI H +F+ Q + W +GRGI+ + + NE +H+
Sbjct: 338 LARISSKSRDTLITKHGIFRN-----QKLDCDDTWSSGRGIWRDGTSNAIALVNEREHII 392
Query: 559 IISMQMGGDLQQVYKRLVSAVNEIEKKIPFSHHDRL-----GFLTFCPTNLGTTVRASVH 395
++ + GGDL + R+ V E + + H + GFL P +GT +R SV+
Sbjct: 393 FLTQEFGGDLCHAFYRMRDLVERTELALEKTGHKYMHSVVYGFLVSSPQEVGTGLRISVN 452
Query: 394 I 392
+
Sbjct: 453 V 453
>SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11)
Length = 115
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = -3
Query: 310 GEHTEAEGGVYDISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 179
G++T +YDISN R+G TE V+++ DG+ LIK+EK L
Sbjct: 58 GDNTPIREDIYDISNADRLGYTEVQLVQKVIDGVNLLIKMEKRL 101
>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
Length = 394
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -2
Query: 548 ADGRRPAAGVQEAGERRQRDREEDPVLAPRPARLP 444
AD RPA G +E +R +RD++ED RPAR P
Sbjct: 258 ADQERPARGPRETSKRTKRDQQED---QERPARGP 289
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 551 DADGRRPAAGVQEAGERRQRDREEDPVLAPRPARLP 444
+ D RPA G ++ +R +RD++ED RPAR P
Sbjct: 117 EEDQERPAGGPRKTSKRTKRDQQED---QERPARGP 149
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 545 DGRRPAAGVQEAGERRQRDREED---PVLAPRPAR 450
D RPA G +E +R +RD++ED P PR R
Sbjct: 75 DQERPARGPRETSKRTKRDQQEDQERPAGRPRKTR 109
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 548 ADGRRPAAGVQEAGERRQRDREED 477
AD RPA G++E +R +RD+ D
Sbjct: 162 ADQERPARGLKETSKRTKRDQHAD 185
>SB_21327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = -3
Query: 559 IISMQMGGDLQQVYKRLVSAVNEIEKKIP-----FSHHDRLGFLTFCPTNLGTTVRASVH 395
+I G DL Y R ++++E+++ F+ D LG++ P +LGT + +
Sbjct: 1 VICWSQGSDLFDTYDRFQRGLSQLEEELKQNDEEFALSDHLGYIVSDPRHLGTAMEVRMR 60
Query: 394 I 392
+
Sbjct: 61 V 61
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -2
Query: 524 GVQEAGERRQRDREEDPVLAPRPARLPHVLPDQ---PGHHGPRL 402
GV E +R R P L P P ++P +LP Q PG G +L
Sbjct: 2338 GVMEVSHQRFALRHPAPGLPPPPQQVPGILPGQVPLPGVDGQQL 2381
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 174 AYRDFSILMSSAMPSYISLTASYS-VSPMRRLLEMSYTP--PSASVCSP 311
+Y S S A PSY S + SYS SP SY+P PS S SP
Sbjct: 688 SYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASP 736
>SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)
Length = 630
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 518 QEAGERRQRDREEDPVLAPRPARLPHVLPDQPGH 417
+++GE+ +RD ++P+ P +++P V GH
Sbjct: 189 RKSGEKMERDNNDNPMPPPTSSKMPRVNSMNVGH 222
>SB_11883| Best HMM Match : I-set (HMM E-Value=0)
Length = 616
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 508 VSAVNEIEKKIPFSHHDRLGFLTFCPTNLGT 416
VSA + +E K+PFS H TFC T+ +
Sbjct: 84 VSAKSNLEIKVPFSFHHPYICPTFCRTSFAS 114
>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 168 GGAYRDFSILMSSAMPSYISLTASYSVSPMRRLLEMSYTPPSASV 302
GGA++ FS +SS++ S S T S + S + + + PP ++
Sbjct: 283 GGAFKAFSASVSSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTI 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,350
Number of Sequences: 59808
Number of extensions: 271940
Number of successful extensions: 1025
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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