Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0024
(892 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 177 6e-45
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 175 2e-44
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 175 3e-44
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 106 2e-23
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 106 2e-23
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 106 2e-23
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 106 2e-23
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 106 2e-23
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 106 2e-23
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 106 2e-23
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 106 2e-23
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 106 2e-23
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 106 2e-23
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 106 2e-23
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 106 2e-23
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 106 2e-23
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 106 2e-23
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 106 2e-23
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 106 2e-23
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 106 2e-23
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 105 4e-23
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 105 5e-23
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 100 1e-21
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 89 3e-18
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 68 1e-11
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 52 5e-07
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 50 2e-06
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 50 2e-06
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 47 2e-05
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 46 3e-05
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 39 0.005
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 38 0.007
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 38 0.007
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 38 0.009
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 38 0.009
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 37 0.016
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 37 0.016
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 37 0.016
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 37 0.016
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 37 0.021
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 37 0.021
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 36 0.036
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 33 0.19
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 33 0.25
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 33 0.34
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 33 0.34
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 31 0.78
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 31 0.78
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 30 1.8
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 30 2.4
At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal... 30 2.4
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER... 30 2.4
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 30 2.4
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 29 3.1
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 29 3.1
At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal... 29 4.1
At1g47680.1 68414.m05297 hypothetical protein 29 4.1
At5g12280.1 68418.m01444 hypothetical protein 29 5.5
At3g11760.1 68416.m01443 expressed protein 28 7.2
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea... 28 7.2
At4g18360.1 68417.m02723 (S)-2-hydroxy-acid oxidase, peroxisomal... 28 9.6
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 177 bits (432), Expect = 6e-45
Identities = 88/139 (63%), Positives = 99/139 (71%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 712
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 711 XXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVME 532
K Y+ P KLAVL+FYKVD +GK+ RL++EC CG G FMA
Sbjct: 77 AKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHF 136
Query: 531 DRHYCGKCHSTMVFKDDDK 475
DRHYCGKC +T VFK D+
Sbjct: 137 DRHYCGKCGTTYVFKKADE 155
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 175 bits (427), Expect = 2e-44
Identities = 87/137 (63%), Positives = 98/137 (71%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 712
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 711 XXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVME 532
K Y+ P KLAVL+FYKVD +GK+ RLR+EC CGAG FMA
Sbjct: 77 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHF 136
Query: 531 DRHYCGKCHSTMVFKDD 481
DRHYCGKC T V++ +
Sbjct: 137 DRHYCGKCGLTYVYQKE 153
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 175 bits (426), Expect = 3e-44
Identities = 86/137 (62%), Positives = 98/137 (71%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 712
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
Query: 711 XXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVME 532
K Y+ P KLAVL+FYK+D +GK+ RLR+EC CGAG FMA
Sbjct: 77 AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHF 136
Query: 531 DRHYCGKCHSTMVFKDD 481
DRHYCGKC T V++ +
Sbjct: 137 DRHYCGKCGLTYVYQKE 153
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 321 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKE 838
VE SDTI+NVKAKIQDKE
Sbjct: 245 VESSDTIDNVKAKIQDKE 262
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -3
Query: 860 KLKFKTKRESLPINKG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 714
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 255 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 303
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 321 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKE 838
VE SDTI+NVKAKIQDKE
Sbjct: 397 VESSDTIDNVKAKIQDKE 414
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -3
Query: 860 KLKFKTKRESLPINKG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 714
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 407 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 455
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKE 838
VE SDTI+NVKAKIQDKE
Sbjct: 321 VESSDTIDNVKAKIQDKE 338
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -3
Query: 860 KLKFKTKRESLPINKG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 714
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 331 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 379
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 321 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKE 838
VE SDTI+NVKAKIQDKE
Sbjct: 397 VESSDTIDNVKAKIQDKE 414
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -3
Query: 860 KLKFKTKRESLPINKG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 714
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 407 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 455
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKE 838
VE SDTI+NVKAKIQDKE
Sbjct: 321 VESSDTIDNVKAKIQDKE 338
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -3
Query: 860 KLKFKTKRESLPINKG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 714
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 331 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 379
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 5e-14
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
+EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T DY I+ S LHLV
Sbjct: 93 IEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLV 146
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 103 bits (247), Expect = 2e-22
Identities = 49/54 (90%), Positives = 52/54 (96%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKE IPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 168 VESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 221
Score = 99.5 bits (237), Expect = 3e-21
Identities = 49/54 (90%), Positives = 52/54 (96%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+D NIQKESTLHLV
Sbjct: 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-NIQKESTLHLV 145
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 781
VE S TI+NVKAKIQDKEGIPP+QQRLIFAGKQLE G
Sbjct: 244 VESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 106 bits (255), Expect = 2e-23
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
+EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLV
Sbjct: 93 IEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 146
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 105 bits (252), Expect = 4e-23
Identities = 49/54 (90%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+N+KAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 93 VESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 100 bits (240), Expect = 1e-21
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEGI P+QQRLIFAGKQ EDGRTL+DYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYNIQKESTLHLV 222
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/54 (81%), Positives = 51/54 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQD EGIPP+Q RLIFAGKQLEDGRTL+DYN+Q++STLHL+
Sbjct: 17 VESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYNVQEDSTLHLL 70
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 105 bits (251), Expect = 5e-23
Identities = 48/54 (88%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKEG+PP+QQRLIFAGKQL+DGRTL+DYNIQKESTLHLV
Sbjct: 95 VESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV 148
Score = 104 bits (250), Expect = 7e-23
Identities = 49/54 (90%), Positives = 52/54 (96%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDT +NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 171 VESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 224
Score = 91.5 bits (217), Expect = 7e-19
Identities = 46/55 (83%), Positives = 50/55 (90%), Gaps = 1/55 (1%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLV 730
VE SDTI+NVKAKIQDKE I P+QQRLIFAG+QLEDG TL+DYNIQKESTLHLV
Sbjct: 247 VESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADYNIQKESTLHLV 301
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/53 (75%), Positives = 46/53 (86%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
V SDTI NVKAKIQD EGIP +QQRLIF+GK L+DGRTL+DY+IQK+S LHL
Sbjct: 19 VVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYSIQKDSILHL 71
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 100 bits (240), Expect = 1e-21
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
V+ SDTI+NVKAKIQDKEGI P QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 95 VKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 148
Score = 95.5 bits (227), Expect = 4e-20
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SD+I NVKAKIQ+KEGIP +QQRLIFAGKQLEDG TL+DYNIQKESTLHLV
Sbjct: 19 VETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHLV 72
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/56 (75%), Positives = 47/56 (83%), Gaps = 2/56 (3%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPP--NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE DTIENVKA +QDKEGI P N QRLIF GK+L+DG TL+DY+IQKESTLHLV
Sbjct: 335 VESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLADYSIQKESTLHLV 390
Score = 81.0 bits (191), Expect = 1e-15
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI+NVKAK+QDKE IP + RLIFAGK LE GRTL+ YNIQK STL+LV
Sbjct: 259 VESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRTLAHYNIQKGSTLYLV 312
Score = 80.2 bits (189), Expect = 2e-15
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -2
Query: 882 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
SDTI++VKAKIQDK G PP+QQ L+F G QL+DGRTL DYNI+ ESTLHL
Sbjct: 412 SDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYNIRNESTLHL 461
Score = 78.6 bits (185), Expect = 5e-15
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE SDTI NVK KIQ KEGI P+QQ LIF G+QLEDG TL DY+I K+STL+LV
Sbjct: 568 VESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYDIHKKSTLYLV 621
Score = 73.3 bits (172), Expect = 2e-13
Identities = 37/55 (67%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL--EDGRTLSDYNIQKESTLHL 733
VE SDTIENVKAKIQD+EG+ P+ QRLIF G++L ED RTL+DY I+ STL L
Sbjct: 176 VESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDNRTLADYGIRNRSTLCL 230
Score = 72.1 bits (169), Expect = 4e-13
Identities = 35/52 (67%), Positives = 40/52 (76%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLH 736
VE SDTI+NVK KIQ K GIP ++QRLIF G+ L RTL DYNIQK ST+H
Sbjct: 492 VESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGSRTLLDYNIQKGSTIH 543
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/54 (75%), Positives = 47/54 (87%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE DTIEN+KAKIQDK+GIP +QQRLIF GKQLEDG TL+DYNIQ +S LHL+
Sbjct: 102 VENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLI 155
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 67.7 bits (158), Expect = 1e-11
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
+E +DTIE +K +I++KEGIPP QR+++ GKQL D T YN+++ S LHLV
Sbjct: 17 IELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLV 70
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
V ++T+ K KI + G+P QQRLIF G+ L+D LS+Y+++ TLHL+
Sbjct: 40 VNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLI 93
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -2
Query: 876 TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
T+E+ K + +P NQQRLI+ G+ L+D +TL Y +Q + T+H+V
Sbjct: 39 TVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMV 87
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = -2
Query: 876 TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
T+E+ K I +P NQQRLI+ G+ L+D +TL Y +Q + T+H+V
Sbjct: 39 TVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTVHMV 87
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 739
V+ SDTI+ +K+ I D+ G P +QQ L G +L++ T+SDYNI+ ++ L
Sbjct: 157 VKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATISDYNIKPDANL 207
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK 796
V+ SDTI +KAK ++KEGIP QQRLIF G+
Sbjct: 66 VKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/53 (39%), Positives = 37/53 (69%)
Frame = -2
Query: 888 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
E DT+E + +I+ K IP +QR+I+ GKQL+ +L+ Y+I+++++L LV
Sbjct: 113 EKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLV 165
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
++ +T+ +K KI+ +GIP ++Q L GK LED DY I ES L L
Sbjct: 17 IDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYMILFESRLLL 69
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE + + ++K I G+ P +Q RL+F G+ L++ + LSDY++++ TL+LV
Sbjct: 27 VERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDYHVEEGHTLYLV 81
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 739
++ +T+ +K KI+ +GIP ++Q L GK LED DY I ES L
Sbjct: 17 IDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYMILFESLL 67
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
DT+ K KI+ + IP ++Q + F GK LED + +++I + LHL
Sbjct: 21 DTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWDILQNPLLHL 69
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
V+ +T+ENVKA ++ + +P QQ+L++ G ++ + LS ++ + L ++
Sbjct: 17 VDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALGVKDDDLLMMM 70
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 739
V PSDTI VK I+D +G P QQ LI GK L+D +L + + +E L
Sbjct: 17 VLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 739
V PSDTI VK I+D +G P QQ LI GK L+D +L + + +E L
Sbjct: 17 VLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 739
V PSDTI VK I+D +G P QQ LI GK L+D +L + + +E L
Sbjct: 17 VLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQD---KEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 739
V P+DTI VK I+D K+ P QQ LI GK L+D TL + + +E L
Sbjct: 17 VLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFL 70
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE I VK +I K G + P++Q +++ G++LED ++D +S LHL+
Sbjct: 127 VERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE I VK +I K G + P++Q +++ G++LED ++D +S LHL+
Sbjct: 127 VERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
+++ ++KAK K + ++ + GK+LED ++L++ N+Q S +HL+
Sbjct: 520 ESVSSLKAKASRKLDFKETEAVKMFYMGKELEDEKSLAEQNVQPNSLVHLL 570
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = -2
Query: 870 ENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
E +K +I ++ IP + QRLI G Q+ DG +S Q ++T++LV
Sbjct: 33 EQIKQRIFEQTKIPTHLQRLISGGYQISDGSAIS----QPDATVNLV 75
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 784
+E + T +K + G+ P QQRL+F GK+ ED
Sbjct: 85 IEATSTFGELKMVLSLLTGLEPKQQRLVFKGKERED 120
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
DT+ +K KI+ + IP ++Q L+F G L+D + I S + L
Sbjct: 21 DTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCVILNHSRIQL 69
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
+++ +++AK K + ++ + GK+L+D ++L+ N+Q S +HL+
Sbjct: 681 ESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLI 731
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
DT+ +K KI+ +G P ++Q LIF K L+D + I+ S + L
Sbjct: 22 DTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIRHNSRILL 70
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
DT+ +K KI+ +G P ++Q LIF K L+D + I+ S + L
Sbjct: 56 DTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIRHNSRILL 104
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 879 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 784
DT+ +K KI+ + IP ++Q LIF G L+D
Sbjct: 21 DTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKE---GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VE S + VK +I KE GIP + + L G++L+D R ++D ++ +HL+
Sbjct: 125 VERSRNVGYVKQQIASKEKELGIPRDHE-LTLDGEELDDQRLITDLCQNGDNVIHLL 180
>At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to Chain A,
Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f) gi|999542
Length = 363
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 730 HQVEGGF--LLDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 849
H V+G LLD VR GT +F+ L+ Q +LIGR ++ L
Sbjct: 272 HAVKGRIPVLLDGGVRRGTDVFKALALGAQAVLIGRPIVYGL 313
>At1g22050.1 68414.m02758 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 119
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = -2
Query: 882 SDTIENVKAKI-----QDKEGIPP--NQQRLIFAGKQLEDGRTLSD 766
S T+ ++K K+ +DKE P N +LI AGK LE+ RTL++
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAE 73
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 882 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 757
S+ + ++K KI + IP N+Q+L L+D +L+ YN+
Sbjct: 726 SENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNV 767
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 784
++ + T +K I GI +QRL+F GK+ ED
Sbjct: 95 IDANSTFGELKMMIAIVSGIEAKEQRLLFRGKERED 130
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 876 TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG----RTLSDYNIQKESTL 739
T+ ++ ++ + G+ P +LIFAGK L+D TLS I++ S +
Sbjct: 22 TLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKENSKI 71
>At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 363
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 751 LLDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 849
LLD VR GT +F+ L+ Q +LIGR ++ L
Sbjct: 281 LLDGGVRRGTDVFKALALGAQAVLIGRPIIYGL 313
>At1g47680.1 68414.m05297 hypothetical protein
Length = 104
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 888 EPSDTIENVKAKIQDKEG-IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 733
E D +E++ K ++ G + +L +G+Q+ R L DY +Q E+T L
Sbjct: 31 EEDDGMEDITKKYHNEVGEVVQGVPQLRRSGRQISQSRYLEDYVMQSETTYGL 83
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 882 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 757
S+ + ++K KI + P N+Q+L L+D +L+ YN+
Sbjct: 367 SENVASLKEKISGEIQFPTNKQKLRGKAGFLKDNTSLAHYNV 408
>At3g11760.1 68416.m01443 expressed protein
Length = 702
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -1
Query: 373 YLLKGNFFDEKTIVHRTCAASVLMNMEIGLPTVKEVSILSRAPTLLSQLFKFLCIYLLIR 194
Y+LK FD KT++H+ +L E G + E ILSR + K + IR
Sbjct: 616 YVLK---FDHKTVIHK-----ILHTEEAGSESEPESEILSRGKESCKEYIKNFLAAIPIR 667
Query: 193 FTQQD 179
Q+D
Sbjct: 668 ELQED 672
>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
similarity to CAST1 [Rattus norvegicus]
gi|22138113|gb|AAL07517
Length = 342
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 469 KSPLAC--KERSRLLCMMDFK*NLDTVSELTRWFYLLKGN 356
KS L C KE+ R LC + + +LD + + WF L N
Sbjct: 86 KSNLLCGLKEKDRSLCNLKLEHSLDELKDFKAWFDFLTLN 125
>At4g18360.1 68417.m02723 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 368
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 754 LDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 849
LD VR GT +F+ L+ + +GR SLF L
Sbjct: 284 LDGGVRRGTDVFKALALGASGVFVGRPSLFSL 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,499
Number of Sequences: 28952
Number of extensions: 356564
Number of successful extensions: 994
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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