Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0021
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 32 0.30
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194... 29 2.1
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 2.8
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 29 3.7
07_01_0371 - 2754176-2754368,2754474-2754571,2755516-2755611 29 3.7
05_05_0251 + 23616546-23617760 29 3.7
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 28 5.0
11_06_0563 - 25018219-25018658,25020381-25020459 28 6.5
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 28 6.5
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 27 8.7
10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485 27 8.7
10_01_0074 + 977173-977309,978271-978351,978444-978459 27 8.7
05_05_0044 - 21819193-21819418,21819531-21820759 27 8.7
01_06_1368 - 36715630-36715698,36715835-36716284 27 8.7
01_01_1013 - 8015552-8015613,8016898-8018035 27 8.7
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 161 ESSKFQQMQDEMSRFEAEI-SGGTGRAVIGSGTWDA---VQARLERVAPMQAPPEP 316
+++ F Q+ SR + ++ SGGTGRA +G G A A E VAP PP P
Sbjct: 85 DANVFYWFQNRKSRSKNKLRSGGTGRAGLGLGGNRASAPAAAHREAVAPSFTPPPP 140
>07_02_0023 -
11918735-11918827,11919139-11919231,11919320-11919484,
11920234-11920327,11921012-11921136,11921228-11921313,
11921786-11921864,11923777-11923857,11924153-11924260,
11924870-11924994,11925110-11925530
Length = 489
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 161 ESSKFQQMQDEMSRFE-AEISGGTGRAVIGSGTWDAVQARLERVAPMQAPPE 313
+SSK ++ + ++ + E AE GG AV G G+ DA A L A PP+
Sbjct: 53 KSSKKKRAKGDLGQGEEAENGGGKVVAVTGKGSADAKYAPLSSFAATALPPQ 104
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 321 GLGSGGACIGATRSRRACTASHVPDPITARPVPP 220
G GSG A + A R R S D + + P+PP
Sbjct: 36 GEGSGAAVVPAKRRRERVVPSRFRDSVVSLPLPP 69
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 342 SYGAMIEGLGSGGACIGATRSRRACTASHVPDPITARPVP 223
S GAM G +GG +GAT R+ ++ P P ARP P
Sbjct: 90 SLGAMAAGTDNGG--LGATARRKRSASARSPPP--ARPPP 125
>07_01_0371 - 2754176-2754368,2754474-2754571,2755516-2755611
Length = 128
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 336 GAMIEGLGSGG-ACIGATRSRRACTASHVPDPITARP 229
G++ G G GG AC TRS R H +PI P
Sbjct: 84 GSVFAGFGLGGLACAWYTRSYRKALKEHFDNPIVWMP 120
>05_05_0251 + 23616546-23617760
Length = 404
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 287 VAPMQAPPEPSPSIMAP 337
VAP Q PP P PSI+ P
Sbjct: 41 VAPQQPPPPPLPSILVP 57
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +2
Query: 161 ESSKFQQMQDEMSRFEAEI-SGGTGRAVIGSG------TWDAVQARLERVAPMQAPPEPS 319
+++ F Q+ SR + ++ SGGTGRA +G G A A E VAP PP
Sbjct: 178 DANVFYWFQNRKSRSKNKLRSGGTGRAGLGLGGNRASEPPAAATAHREAVAPSFTPPPIL 237
Query: 320 P 322
P
Sbjct: 238 P 238
>11_06_0563 - 25018219-25018658,25020381-25020459
Length = 172
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -3
Query: 336 GAMIEGLGSGGACIGATRSRRACTASHVPDPITARPVPPDISASN 202
G ++ G GS G R RRA S PDP A VPP A +
Sbjct: 105 GLVLPGSGSNGPRPTRIRQRRA---SSRPDPAAAGLVPPGYGAKS 146
>08_01_0514 +
4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -1
Query: 320 GWVLVGPALEPPVLDGLARHPMCQIRSLHVQCLLIFQLQTWTSHLASVETLRI 162
G + + P P L+ C ++ LH+ I ++ W S L +++ L++
Sbjct: 642 GNIHIWPGPYPLSLESCCPTTTCSLQKLHITYCFICKVPNWMSSLGNLKELKL 694
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 321 GLGSGGACIGATRSRRACTASHVPDPITARPVP-PDISASNLDI 193
G GSGG T RR ++S + P+ + P P P SA L I
Sbjct: 62 GGGSGGGSRSTTPGRRGSSSSSLVGPVPSPPSPVPFPSAEELVI 105
>10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485
Length = 346
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 299 ALEPPVLDGLARHPMCQIRSLHVQCLLIFQLQTWTSHLASVETLRIL 159
A PPVLD + H + +I S + L+ F LQ+ HL+ E ++ L
Sbjct: 62 AAPPPVLDMIGPHILTRIESRSMYGLISF-LQSRYHHLSEHEIVQCL 107
>10_01_0074 + 977173-977309,978271-978351,978444-978459
Length = 77
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 333 AMIEGLGSGGACIGATRSRR 274
A+ +G GSGG C G+ R RR
Sbjct: 9 ALGDGSGSGGRCCGSARRRR 28
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +2
Query: 218 SGGTGRA-----VIGSGTWDAVQARLERVAPMQ-APPEPSPSIMA 334
SGG G+ G WD ARL VAP Q APP + + MA
Sbjct: 278 SGGGGKVRPVAGATGDDRWDESLARLSGVAPQQPAPPAGTGAGMA 322
>01_06_1368 - 36715630-36715698,36715835-36716284
Length = 172
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 336 GAMIEGLGSGGACIGATRSRRACTASHVPDPITARPVPPDISA 208
GA G+G G +G T +P+ ARPVP ++ A
Sbjct: 78 GANGGGVGRGPGGVGDLGELLRWTREVAANPVAARPVPAEVKA 120
>01_01_1013 - 8015552-8015613,8016898-8018035
Length = 399
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 305 GPALEPPVLDGLARHPM 255
GP EPPVLDG R P+
Sbjct: 96 GPEPEPPVLDGFYRGPL 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,272,594
Number of Sequences: 37544
Number of extensions: 319374
Number of successful extensions: 1312
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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