Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0018
         (929 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    28   0.090
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   1.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   3.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   4.5  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 0.090
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 466 TYRMFCSGDLGPSSSNLIPLGQIKQEPDLHTPSRRRAKLKPDLKLKVSVCKVLSACS 636
           TY   C      S S+L P    K  P   TP   RAK+   +K  ++V  +  ACS
Sbjct: 222 TYTSICIEIWQSSESSLRPRSSQKSAPGKRTPLISRAKIN-TVKQTIAVIVMYIACS 277


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 272 IENQSTSTYNCTIDNLSTLSRSVRF-RLISTRTRKR 168
           + N+ +  YN  I+NL T   +  F  L+   T++R
Sbjct: 428 LNNEGSLVYNVQIENLKTTPDNTTFITLVDVSTKRR 463


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 423 YSNIDCSKSFTKIINIS 473
           Y  IDC+KSF++  N++
Sbjct: 22  YRCIDCNKSFSQAANLT 38


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 423 YSNIDCSKSFTKIINIS 473
           Y  IDC+KSF++  N++
Sbjct: 278 YRCIDCNKSFSQAANLT 294


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 LVRVEIKRNRTDLERVDRLSIVQLYVLVDWFSML 276
           LV + +  N T +  + + +  QL+ LV W  ++
Sbjct: 199 LVALVVNENNTTVNNICQATHKQLFQLVQWAKLV 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,643
Number of Sequences: 336
Number of extensions: 5206
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)