Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0017
         (851 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 322 TPSGRRIPRGVRTSLPGQNAIPRRPDYS 405
           +P G   P    +SLP Q      P YS
Sbjct: 70  SPQGAPSPSSTPSSLPTQRTSTSNPTYS 97


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 368 GRLVLTPRGIRRPDGVAVS 312
           GRLVLT   + +P+ + +S
Sbjct: 375 GRLVLTVSSVSKPEALRLS 393


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 674 QKPHTTFKLWKI 709
           +K H TFK WK+
Sbjct: 51  EKLHFTFKSWKV 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,875
Number of Sequences: 336
Number of extensions: 4305
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)