Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0016
(985 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.58
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 29 0.76
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 29 0.76
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 29 1.0
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 1.0
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 3.1
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 27 3.1
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 3.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.1
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 5.4
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 27 5.4
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 7.1
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.1
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 7.1
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 7.1
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 9.4
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 9.4
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.58
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 35 GIIENVEREETIEPELSDTLSDAVPINVVD--PITNNHINLK 154
G+I+N+E + I E SDTL + + IN ++ N++ NLK
Sbjct: 280 GLIQNLEDSDDIHEESSDTLEEPLLINELNRTSFLNSNNNLK 321
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 676 YTNNPTYRTSCPNPTPTGAS 735
Y N P YR PNPTP AS
Sbjct: 178 YCNGPCYRCMFPNPTPVVAS 197
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 29.5 bits (63), Expect = 0.76
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 396 WPKNLNQHQPLEMILKSKIKMTRIGTLVVVLDTLLKG 506
WP N HQ + + L ++ K T L+V LDT + G
Sbjct: 161 WPSN--DHQDITISLLNRAKKTGCRVLIVTLDTFILG 195
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 29.1 bits (62), Expect = 1.0
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 683 TTLPTEPVVQTPPLQEPAINETTRRTPKDDLSNDIETLLVEI----RDVQTRLTDLPDES 850
T+LP P VQT P +N + ++ +SN + L I DV RL P
Sbjct: 371 TSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSANNDVMARLQ--PKSP 428
Query: 851 LEATEEVS 874
+ AT+ S
Sbjct: 429 IPATKSYS 436
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 737 INETTRR---TPKDDLSNDIETLLVEIRDVQTRLTDLPDES 850
INE R+ +DL +D + VE+ +QTRLTDL E+
Sbjct: 355 INEQERKHLEAMMEDLLDDPDKNAVELDTIQTRLTDLETEN 395
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 3.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 737 INETTRRTPKDDLSNDIETLLVE-IRDVQTRLTDLPDESLEATEEVSRRESNFNQ 898
IN+ RR KD+L+N+ E L E I+ + + +D P L VS S F +
Sbjct: 240 INQLNRRRTKDNLTNNPEISLDEPIKALPSTTSDAPSSLLNT--NVSSSPSKFRK 292
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 3.1
Identities = 23/87 (26%), Positives = 32/87 (36%)
Frame = +2
Query: 614 ETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKDDLSNDIET 793
E + L N A + D + PVVQT +E N T KDD E
Sbjct: 24 EEKNQPLTGNEVETSAQLSRDTANADISSPVVQTVVHKEATENPTASSYRKDDSVKQNEK 83
Query: 794 LLVEIRDVQTRLTDLPDESLEATEEVS 874
LL + + ++ L A E +S
Sbjct: 84 LLHSNPTFKISKPTVLEQPLNAIEHLS 110
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +2
Query: 614 ETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKDDLSNDIET 793
E S LD AE + A E++ T + E PP I+ T P L D+
Sbjct: 139 EAMSRKLDEEAELEEKEAEEELHTNIHPEAPTVLPP-----IDGFTDSQPISTLPQDLSQ 193
Query: 794 LLVEIRDVQTRLTD 835
+ + I+++ L D
Sbjct: 194 IQLRIQEIVRVLND 207
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 3.1
Identities = 23/109 (21%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +2
Query: 554 SMDLPGGICSWKDHSSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEP 733
S+D GG + ++ + LSAE+ + L N + D+ + + PVV+ PP+Q
Sbjct: 185 SLDKAGGPLNQQNEN--LSAESDNTILQ-NGTRKSSVKMSDLGKRIASLPVVKRPPIQFS 241
Query: 734 AINETTRRTPKDDLSNDIETLLVEIRDVQT-RLTDLPDESLEATEEVSR 877
++ + K D ++++ + + ++ R +P++ + + SR
Sbjct: 242 ISSDYIKPVDKSDQTSNVPSPSSSVGSLRLYRSPSIPNDVEQPQPQSSR 290
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 673 GYTNNPTYRTSCPNPTPTGASHQRDNP 753
GY+ +P Y S P+ +PT S+ +P
Sbjct: 1564 GYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 620 PSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQE 730
P +++D N E+L A A + ++ +P+EP +Q P L E
Sbjct: 601 PGNAIDVN-ESL-ARAFDQLVGIVPSEPTIQVPNLIE 635
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 608 SSKSYDLSNYIYRRVSPWTDTW 543
+SK +D + Y +RR +P TD++
Sbjct: 2 TSKKFDFTEYSHRRYNPLTDSY 23
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 7.1
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 764 KDDLSNDIETLL-VE--IRDVQTRLTDLPDESLEATEEVSRRESNFNQVRRSSRAVGAED 934
+D+ S ET+ +E I ++ L L +ES++ E S + N NQ +RSSR + ED
Sbjct: 504 QDENSEKTETIAQLEQIIEELHEELRSLEEESIK---ESSATQQNENQHKRSSRKLLYED 560
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = +2
Query: 584 WKDHSSYLSAETPSDSLDSNAEA-LQASATEDILTTLPTEPVVQTPPLQEPAINE 745
W ++ E L N E L ED T E VV PLQ INE
Sbjct: 46 WLTYADKCVIELSKSELKPNEEKELPKDIKEDCKTVEEKEKVVPRKPLQSEGINE 100
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 7.1
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +2
Query: 644 AEALQASATEDILTTLPTEPVVQ----TPPLQEPAINETTRRTPKDDLSNDIETLLVEIR 811
A A A+ TE + TLP E VVQ P L P T DD D ++++
Sbjct: 475 AAAELANITEAAIATLPQETVVQPEGEAPELGSPMGFPVTALESADDSLFDAPPVMLDEA 534
Query: 812 DV--QTRLTDLPDESLEATE 865
D+ RL E+L +++
Sbjct: 535 DLLGSERLDSSVSEALPSSQ 554
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 387 KYWHSASWYKCFSTQNLLSLRMFSMSTFTSVFK 289
+Y++ A WYK +QN +S+ M + ++ K
Sbjct: 154 QYFNLARWYKFMDSQNAVSVTMEEFTKAVNISK 186
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = -2
Query: 366 WYKCFSTQNLLSLRMFSMSTFTSVFKLRSIGFSFGWFCFTIGGVLSFLSFC*TNNNSASS 187
W++ F T + +F S F FK+ S + F ++S L F +
Sbjct: 555 WWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFG 614
Query: 186 VAYLFIQKL 160
A+LF+ K+
Sbjct: 615 -AFLFVNKI 622
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 767 DDLSNDIETLLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQVRRSSRAVGAEDHG-- 940
D L + + +L + Q L + + +E ++ + N N ++ A+GAE G
Sbjct: 21 DSLKSVLNDVLSSLERFQVDLDVATSDIYKVSERSNKIQVNLNNLKAVESALGAEIDGAI 80
Query: 941 VPPEV 955
+PP++
Sbjct: 81 LPPDL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,845
Number of Sequences: 5004
Number of extensions: 69482
Number of successful extensions: 295
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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