Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0009
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.62 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   5.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.7  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 203 RGRPQSSRPYRHLLTAACPLLSSVG 129
           + RP    PY   + AAC L SS G
Sbjct: 59  QARPPQDSPYDASVAAACKLYSSEG 83


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 365 VATSPLRPKVDWELFKRRL 421
           +A+    P++ WEL+ RRL
Sbjct: 436 IASGNPTPEITWELYGRRL 454


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 498 SGERSTRRRLLCPAAGP 548
           SGER     L CP A P
Sbjct: 93  SGEREASVSLFCPKAKP 109


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 297 RHCTTWVPPISLSWSHWEWGSPGLRPRP 380
           RH    +P +SLS      GS  L P+P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQP 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,245
Number of Sequences: 336
Number of extensions: 3428
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)