Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0009
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_7302| Best HMM Match : DUF910 (HMM E-Value=2.2) 30 1.6
SB_40068| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 2.8
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2) 29 2.8
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 2.8
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 29 2.8
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 28 4.9
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1) 28 4.9
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06) 28 4.9
SB_10041| Best HMM Match : ig (HMM E-Value=3.5e-06) 28 6.4
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 28 6.4
SB_56923| Best HMM Match : PT (HMM E-Value=0.95) 28 6.4
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35) 28 6.4
SB_29149| Best HMM Match : Usp (HMM E-Value=0.0028) 27 8.5
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 27 8.5
SB_3971| Best HMM Match : UPF0058 (HMM E-Value=5.6) 27 8.5
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = +1
Query: 271 GATVPLNY*GTVRPGYPPSPYPGHTGNGAHPGCDLAPTTEGRLGA 405
GA P G V PP P PGH G PG AP G GA
Sbjct: 88 GAPGPPGEPGQVGMAGPPGP-PGHVGEDGAPGAPGAPGPPGSPGA 131
>SB_7302| Best HMM Match : DUF910 (HMM E-Value=2.2)
Length = 288
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +3
Query: 414 DA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTRR 521
D S F + RTP PLR S TRQS TPS T++
Sbjct: 125 DLESFFTKHRTPIPLRLSGTRQS--GTPSDLERTKK 158
>SB_40068| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 406
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 HIPTAAQLQPDVLDVCVH 268
HIP+ AQLQ D+ D C+H
Sbjct: 230 HIPSPAQLQDDLRDDCMH 247
>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
Length = 334
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -2
Query: 197 RPQSSRPYRHLLTAACPLLSSVGSPTRRASR*GPRP---AELGGCRNSGPVLCPRGEN 33
R ++ R LT A P S SPT R P+P ++ + + P + PRG+N
Sbjct: 177 RDRAKEKERIPLTPATPSTPSTPSPTSETPRPRPQPPKRSDSFNIKRNRPFIIPRGDN 234
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 44 GDIRRVLNCDSRPAL-LVGDLNAKHVAWGS 130
G +R++ D+ PA+ L+GD N +HV W S
Sbjct: 370 GGVRKLHPSDNPPAIYLLGDFNFRHVDWVS 399
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 384 DRRSTGSSLRDA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTRRRLLCPAAGPEVYSR 563
DR S+ SS D P+ + L R+S+ S+ GE+ RRR ++G E S+
Sbjct: 1291 DRSSSSSSSSDDEIKAPRIKGGLELAKQRHRKSSSSSSDGEKQRRRRRRKSSSGSEGKSK 1350
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 YSAYMTPGA*FSPRGHKTGPELRQPP-SSAGRGPQREARRVGLPT 135
Y A P PRG TGP R PP SSA + + R G P+
Sbjct: 293 YGAIPPPVYQTIPRGPATGPATRWPPSSSASSHMSQHSFREGAPS 337
>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
Length = 256
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 176 RGDYSVVGPDEPTHIPTAAQ-----LQPDVLDVCVHKGLRCPLTIEALYDLGT 319
R Y D+ T + T LQ ++D+C++ GL+ +EA + GT
Sbjct: 39 RSKYHTREKDQQTQLKTQIDTFILILQVRIIDICINSGLKAQENLEAQFGPGT 91
>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
Length = 479
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Frame = +2
Query: 209 PTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILV-TLGMGLT-RVATSPL 382
PT +P + P D H+G Y LG P + + +GLT SP
Sbjct: 115 PTRVPDSTSPTPAQADGLRHRGTPMQTPSPFNYPLGLPQMHFMQHPQHVGLTFATPPSPT 174
Query: 383 RPKVDWELFKRRLVDLPAIQDPNTPE 460
P VD +L +++ P D E
Sbjct: 175 TPPVDQQLPQQQAPPPPPPADQGNEE 200
>SB_10041| Best HMM Match : ig (HMM E-Value=3.5e-06)
Length = 333
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 LTRVATSPLRPKVDWELFKRRLVDLPAIQD-PNTP 457
+TR + SPL P W+L + LP I D P +P
Sbjct: 97 MTRTSPSPLSPSASWDLKVKEESLLPKIADFPYSP 131
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 207 SSGPTTE*SPLSASSNSRLPTAEFSREPHATCFALRSPTSRAG 79
SSGP+T+ +P S S + + T F+ P + ++SP S G
Sbjct: 51 SSGPSTDSAPPSNQSKTTVNTNSFAHSPSSD---IKSPASTMG 90
>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
Length = 441
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -1
Query: 204 SGPTTE*SPLSASSNSRLPTAEFSREPHATCFALRSPTSRAGRLSQFRTRLMSPG*KSGP 25
S PT S +++ S++ S PH C SPTS AG S F + + S G P
Sbjct: 307 STPTESTSSMTSPCGSQMSYPARS-PPHVQCDPF-SPTSSAGHPSPFPSPIGSHGPSISP 364
Query: 24 GG 19
G
Sbjct: 365 AG 366
>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
Length = 337
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 207 SSGPTTE*SPLSASSNSRLPTAEFSREPHATCFALRSPTSRAG 79
SSGP+T+ +P S S + + T F+ P + ++SP S G
Sbjct: 194 SSGPSTDSAPPSNQSKTTVNTNSFAHSPSSD---IKSPASTMG 233
>SB_29149| Best HMM Match : Usp (HMM E-Value=0.0028)
Length = 106
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 89 LVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEP-THIPTAAQLQ 241
L DL+AKHV GSR + R LL DY V P T IP + Q
Sbjct: 55 LAKDLSAKHVVMGSRGCGTIRRTLLGSV--SDYCVHHSSVPVTVIPPTKKRQ 104
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 360 PGLRPRPYDRRSTGSSLRDA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTRRRLLCPA 539
P +PRP RRS S+ ++P+P R S+ S+ S RS RRR P
Sbjct: 1104 PPTKPRP-SRRSLSKSVS---------KSPSPARKGKRSSSSSSSRSRSRSPRRRKRSPT 1153
Query: 540 AGP 548
P
Sbjct: 1154 PKP 1156
>SB_3971| Best HMM Match : UPF0058 (HMM E-Value=5.6)
Length = 132
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 230 RRSECAWVRRGRPQSSRPYRHLL 162
RRS+ W++ P++S Y H+L
Sbjct: 90 RRSQSKWIKENVPETSEVYDHIL 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,450,488
Number of Sequences: 59808
Number of extensions: 505935
Number of successful extensions: 2058
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2052
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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