Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0009
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 41 6e-04
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 32 0.34
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 0.46
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 31 0.46
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 31 0.60
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 30 1.1
Z78418-5|CAB01694.2| 361|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 29 1.8
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 1.8
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 1.8
U53332-11|AAK31531.1| 668|Caenorhabditis elegans Protein tyrosi... 29 2.4
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 29 2.4
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 29 2.4
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 29 2.4
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 29 2.4
AF015882-1|AAC21678.1| 668|Caenorhabditis elegans protein tyros... 29 2.4
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 29 3.2
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 3.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 4.2
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 4.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 4.2
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 4.2
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 4.2
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 4.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 4.2
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 4.2
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 25 4.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 25 4.8
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 5.6
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 5.6
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical p... 27 9.8
Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 27 9.8
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 41.1 bits (92), Expect = 6e-04
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Frame = +2
Query: 47 DIRRVLNCDSRPALLVGDLNAKHVAWGSR-LNSAVGRRLLEDAD-RGDYSVVGPDEPTHI 220
D + S+ +++ GD+NA H AW S GR L E D D + T
Sbjct: 23 DFSNIFQTKSK-SIISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRA 81
Query: 221 PTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILVTLGMGLTRVATSPL---RPK 391
T + PD+ +C + LY LG+ H+P+ + + T L K
Sbjct: 82 DTYSISSPDITICTADLATKCHWS--TLYKLGSDHIPMKLKINQAATPKRPKRLVANFKK 139
Query: 392 VDWELFK 412
+W+LF+
Sbjct: 140 ANWQLFR 146
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 313 GYPPSPYPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSRP 429
G P+ PG G +PG D AP G G + ETP P
Sbjct: 206 GEGPAGPPGPPGPAGNPGTDGAPGNPGAPGQVTETPGTP 244
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 310 PGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSRPSRN 438
PG P P PG G PG D +P +G GA E P +P R+
Sbjct: 210 PGEPGQPGQPGQRGPAGEPGKDGSPGGQGEKGASGE-PGQPGRD 252
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 31.5 bits (68), Expect = 0.46
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 298 GTVRPGYPPSP--YPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSRPS 432
GT P PP P PGH+GN PG P G A P+R S
Sbjct: 229 GTPGPQGPPGPSGQPGHSGNDGVPGTPGNPGAPGGDAAYCPCPARSS 275
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 307 RPGYPPSPYPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSRP 429
R G + PG G +PG D AP G G + ETP P
Sbjct: 194 RGGVGEAGPPGPPGTSGNPGTDGAPGNPGAPGQVTETPGTP 234
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 207 SSGPTTE*SPLSASSNSRLPTAEFSREPHATCFALRSPTSRAGRLSQFRTR 55
S+ P + S SR P+ SR + +SP SR GR+S+ R+R
Sbjct: 160 SASPPVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSR 210
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 207 SSGPTTE*SPLSASSNSRLPTAEFSREPHATCFALRSPTSRAGRLSQFRTR 55
S+ P + S SR P+ SR + +SP SR GR+S+ R+R
Sbjct: 160 SASPPVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSR 210
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +1
Query: 310 PGYPPSP--YPGHTGNGAHPGCDLAPTTEGRLG 402
P PP P PG GN PG D P GR G
Sbjct: 170 PAGPPGPPGNPGPQGNSGRPGMDGMPGRNGRCG 202
>Z78418-5|CAB01694.2| 361|Caenorhabditis elegans Hypothetical
protein F25D7.2 protein.
Length = 361
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 328 PYPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSRP 429
P+ + NG + G + APTTEG A + P P
Sbjct: 291 PHVNNNNNGENDGDNTAPTTEGETPATSDAPVEP 324
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYP-PSPYPGHTGNGAHPGCDLAPTTEGRLG 402
PG P PS PG G PG D AP +G G
Sbjct: 220 PGEPGPSGLPGDQGQAGRPGSDGAPGPQGPPG 251
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.5 bits (63), Expect = 1.8
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 3/149 (2%)
Frame = -1
Query: 462 PSGVLGS*IAGRSTRRLLKSSQSTFGRRGEVATRVSPIPSVTRIGRWGVPRSYSASIVKG 283
PS GS ++ S +T G + S P T + + SAS G
Sbjct: 421 PSTTSGSTVSDTSGPSTTSGPSTTLGTTQSTTSGPSTTPGST------ISTTSSASTTSG 474
Query: 282 HRSPL*THTSNTSGWSCAAVGMCVGSSGPTTE*SPLSASSNSRLPTA--EFSREPHATCF 109
+ + S TSG S ++ +SGPTT P + S + T+ + P T
Sbjct: 475 PSTSSGSTVSTTSGQSTSSGTTKSTTSGPTTSSGPSTVSERTLSTTSGPSTTSGPSTTSG 534
Query: 108 ALRSPTSRAGRLS-QFRTRLMSPG*KSGP 25
+ S T A S ++ P SGP
Sbjct: 535 STVSTTPGASTTSGSTQSTTSGPSTSSGP 563
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 298 GTVRPGYPPSP--YPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSR 426
G+ P PP P PGH+GN PG P + G A P+R
Sbjct: 229 GSPGPQGPPGPSGQPGHSGNDGVPGAPGNPGSPGGDAAYCPCPAR 273
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLG 402
G+ PG P +P PGH G PG AP G G
Sbjct: 234 GSGTPGQPGAPGAPGHPGQAGTPGTPGAPGNSGAPG 269
>U53332-11|AAK31531.1| 668|Caenorhabditis elegans Protein tyrosine
phosphatase protein2 protein.
Length = 668
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 378 PYDRRSTGSSLRDA*STFPQFRTPTP--LRGSTTRQSALSTPSGERSTRRRLLCPAAGPE 551
PY +S DA FP+ PTP R S+ RQ S PS S+R P GP+
Sbjct: 586 PYPVKSFIDGDTDA-FDFPRRLRPTPNASRPSSARQVTSSRPSSSASSRTSHSRPRTGPQ 644
Query: 552 VYSRPI*KR 578
+ PI +R
Sbjct: 645 --AEPIFER 651
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 360 PGLRPRPYDRRSTGSSLRDA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTR 518
PG+R R G+ L + S+ Q+ P PL STT +S S SG STR
Sbjct: 392 PGVR-RLLLEHQHGTLLGEKISSCSQYFEPPPLPHSTTLRSGKSAFSGYSSTR 443
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 360 PGLRPRPYDRRSTGSSLRDA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTR 518
PG+R R G+ L + S+ Q+ P PL STT +S S SG STR
Sbjct: 420 PGVR-RLLLEHQHGTLLGEKISSCSQYFEPPPLPHSTTLRSGKSAFSGYSSTR 471
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 360 PGLRPRPYDRRSTGSSLRDA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTR 518
PG+R R G+ L + S+ Q+ P PL STT +S S SG STR
Sbjct: 392 PGVR-RLLLEHQHGTLLGEKISSCSQYFEPPPLPHSTTLRSGKSAFSGYSSTR 443
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 360 PGLRPRPYDRRSTGSSLRDA*STFPQFRTPTPLRGSTTRQSALSTPSGERSTR 518
PG+R R G+ L + S+ Q+ P PL STT +S S SG STR
Sbjct: 392 PGVR-RLLLEHQHGTLLGEKISSCSQYFEPPPLPHSTTLRSGKSAFSGYSSTR 443
>AF015882-1|AAC21678.1| 668|Caenorhabditis elegans protein tyrosine
phosphatase protein.
Length = 668
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 378 PYDRRSTGSSLRDA*STFPQFRTPTP--LRGSTTRQSALSTPSGERSTRRRLLCPAAGPE 551
PY +S DA FP+ PTP R S+ RQ S PS S+R P GP+
Sbjct: 586 PYPVKSFIDGDTDA-FDFPRRLRPTPNASRPSSARQVTSSRPSSSASSRTSHSRPRTGPQ 644
Query: 552 VYSRPI*KR 578
+ PI +R
Sbjct: 645 --AEPIFER 651
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 298 GTVRPGYPPSP--YPGHTGNGAHPGCDLAPTTEGRLGA 405
G+ P P P PG G+ HPG P ++G GA
Sbjct: 158 GSAGPAGPKGPDGRPGQPGSAGHPGAPGQPGSKGNNGA 195
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 310 PGYPPSPYPGHTGNGAHPGCDLAPTTEGRLGAL*ET 417
P PP P PG GNG G T+G+ G+L E+
Sbjct: 111 PAGPPGP-PGDDGNGGQDGVRGNDGTDGKEGSLLES 145
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGR 396
G +PG+P P PG G PG P T GR
Sbjct: 91 GCCKPGHPGRPGLPGRNGKPGVPGAPGRPGTPGR 124
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSPY-PGHTGNGAHPGCDLAPTTEGRLG 402
PG P +P PG G PG D AP + G G
Sbjct: 158 PGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRG 189
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 307 RPGYP-PSPYPGHTGNGAHPGCDLAPTTEGRLGAL*ETPSRPS 432
+PG P P +PG GN PG A G A PSR S
Sbjct: 240 QPGQPGPDGHPGQPGNAGPPGTPGAAGQPGGDAAYCPCPSRSS 282
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 298 GTVRPGYPPSPYPGHTGNGAHPGCDLAPTTEGRLG 402
GT P P PG GN PG D AP G+ G
Sbjct: 212 GTAGSPGPQGP-PGQNGNDGQPGNDGAPGQPGQPG 245
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLG 402
PG P SP +PG G+ PG P EG+ G
Sbjct: 823 PGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRG 854
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGAL*ET 417
GT G P P PG GN PG D P G G + T
Sbjct: 361 GTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNT 401
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLG 402
PG P SP +PG G+ PG P EG+ G
Sbjct: 822 PGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRG 853
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGAL*ET 417
GT G P P PG GN PG D P G G + T
Sbjct: 360 GTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNT 400
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSPY-PGHTGNGAHPGCDLAPTTEGRLG 402
PG P +P PG G PG D AP + G G
Sbjct: 153 PGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRG 184
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLG 402
PG P SP +PG G+ PG P EG+ G
Sbjct: 822 PGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRG 853
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGAL*ET 417
GT G P P PG GN PG D P G G + T
Sbjct: 360 GTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNT 400
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLG 402
PG P SP +PG G+ PG P EG+ G
Sbjct: 823 PGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRG 854
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGAL*ET 417
GT G P P PG GN PG D P G G + T
Sbjct: 361 GTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNT 401
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLG 402
PG P SP +PG G+ PG P EG+ G
Sbjct: 859 PGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRG 890
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGAL*ET 417
GT G P P PG GN PG D P G G + T
Sbjct: 397 GTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNT 437
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 310 PGYPPSPY-PGHTGNGAHPGCDLAPTTEGRLG 402
PG P +P PG G PG D AP + G G
Sbjct: 153 PGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRG 184
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 307 RPGYPPSPYPGHTGNGAHPGCDLAPTTEGRLG 402
+PG P S PG G PG D AP G G
Sbjct: 272 QPGAPGSSQPGPQGPPGDPGIDGAPGNPGSPG 303
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 25.4 bits (53), Expect(2) = 4.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 313 GYPPSPYPGH 342
GYPP P PGH
Sbjct: 733 GYPPPPQPGH 742
Score = 21.0 bits (42), Expect(2) = 4.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 307 RPGYPPSPYPG 339
RP Y PYPG
Sbjct: 712 RPPYQAQPYPG 722
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 25.4 bits (53), Expect(2) = 4.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 313 GYPPSPYPGH 342
GYPP P PGH
Sbjct: 733 GYPPPPQPGH 742
Score = 21.0 bits (42), Expect(2) = 4.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 307 RPGYPPSPYPG 339
RP Y PYPG
Sbjct: 712 RPPYQAQPYPG 722
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 334 PGHTGNGAHPGCDLAPTTEGRLG 402
PG TG HPG P GR+G
Sbjct: 161 PGQTGESGHPGLPGRPGKPGRVG 183
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 334 PGHTGNGAHPGCDLAPTTEGRLG 402
PG TG HPG P GR+G
Sbjct: 161 PGQTGESGHPGLPGRPGKPGRVG 183
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.1 bits (57), Expect = 9.8
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = -1
Query: 357 SPIPSVTRIGRWGVPRSYSASIVKGHR-SPL*THTSNTSGWSCAAVGMCVGSSG--PTT- 190
+PI V WG P Y +S+ +R SP ++ NTS S +V PTT
Sbjct: 9 TPIKMVGSQDSWGTPPHYRSSLNSNYRDSP--ANSRNTSARSRLSVSSAQSPHCFLPTTR 66
Query: 189 E*SPLSASSNSRLPTAEFSREPHATCFALRSPTSRAG 79
+ SP S S S +P S SP S G
Sbjct: 67 DSSPRSIPSPSLVPMRPDSSSDITINELHHSPLSHTG 103
>Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 291 LLRHCTTWVPPISLSWSHWEWGS--PGLRPRP 380
+L + TW+P + HW++GS PG P
Sbjct: 12 ILAYLATWIPTLLKYKRHWQYGSKLPGPPAHP 43
>Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 291 LLRHCTTWVPPISLSWSHWEWGS--PGLRPRP 380
+L + TW+P + HW++GS PG P
Sbjct: 12 ILAYLATWIPTLLKYKRHWQYGSKLPGPPAHP 43
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 298 GTVRPGYPPSP-YPGHTGNGAHPGCDLAPTTEGRLGA 405
G PG P +P G GN PG D AP G GA
Sbjct: 201 GRGTPGAPGAPGAAGAPGNNGQPGQDGAPGQAGAPGA 237
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 307 RPGYP-PSPYPGHTGNGAHPGCDLAPTTEGRLG 402
RPG P P GH G PG P +GR G
Sbjct: 183 RPGQPAPQGNAGHPGRDGEPGQPGNPGKDGRKG 215
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 271 GATVPLNY*GTVRPGYPPSPYPGHTGNGAHPG 366
G T P G GY PSP G GNG PG
Sbjct: 80 GYTGPTAGTGFGNAGYTPSPPAGVPGNGFVPG 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,441
Number of Sequences: 27780
Number of extensions: 363366
Number of successful extensions: 1261
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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