Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0005
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   4.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   8.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   8.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   8.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   8.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   8.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   8.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 803 MSERAHGPANFKWLPDRINLTTP 735
           M E  H   +F++ PD  N+T P
Sbjct: 1   MEEFRHNGRDFEYCPDLDNVTMP 23


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 560 ISS*SSVTF*NFDFSLNCDNTNYGLKGCRKTIVHS 664
           ISS S+ T  N ++  N +N NY      K + ++
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 560 ISS*SSVTF*NFDFSLNCDNTNYGLKGCRKTIVHS 664
           ISS S+ T  N ++  N +N NY      K + ++
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 560 ISS*SSVTF*NFDFSLNCDNTNYGLK 637
           ISS S+ T  N ++  N +N NY  K
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 560 ISS*SSVTF*NFDFSLNCDNTNYGLK 637
           ISS S+ T  N ++  N +N NY  K
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 560 ISS*SSVTF*NFDFSLNCDNTNYGLK 637
           ISS S+ T  N ++  N +N NY  K
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 560 ISS*SSVTF*NFDFSLNCDNTNYGLK 637
           ISS S+ T  N ++  N +N NY  K
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 351 ILWPAWIKFASSSDY 307
           +LW  W+ F S S Y
Sbjct: 230 VLWWGWLAFNSGSTY 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,906
Number of Sequences: 438
Number of extensions: 4850
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)