Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0004
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 290 7e-79
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 290 7e-79
SB_56| Best HMM Match : Actin (HMM E-Value=0) 290 7e-79
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 290 9e-79
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 288 3e-78
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 288 3e-78
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 258 2e-69
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 86 3e-17
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 85 4e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 69 4e-12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.006
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 36 0.043
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.2
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 29 2.8
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0) 29 5.0
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 5.0
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 290 bits (712), Expect = 7e-79
Identities = 134/140 (95%), Positives = 138/140 (98%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
LEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 199 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 258
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 347
NTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 259 NTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 318
Query: 346 WISKQEYDESGPSIVHRKCF 287
WISKQEYDESGP+IVHRKCF
Sbjct: 319 WISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 290 bits (712), Expect = 7e-79
Identities = 134/140 (95%), Positives = 138/140 (98%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
LEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 296
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 347
NTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356
Query: 346 WISKQEYDESGPSIVHRKCF 287
WISKQEYDESGPSIVHRKCF
Sbjct: 357 WISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 290 bits (712), Expect = 7e-79
Identities = 134/140 (95%), Positives = 138/140 (98%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
LEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 295
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 347
NTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 355
Query: 346 WISKQEYDESGPSIVHRKCF 287
WISKQEYDESGPSIVHRKCF
Sbjct: 356 WISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 290 bits (711), Expect = 9e-79
Identities = 134/140 (95%), Positives = 138/140 (98%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
LEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 296
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 347
NTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356
Query: 346 WISKQEYDESGPSIVHRKCF 287
WISKQEYDESGPSIVHRKCF
Sbjct: 357 WISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 288 bits (707), Expect = 3e-78
Identities = 133/140 (95%), Positives = 138/140 (98%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
LEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 295
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 347
NTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 355
Query: 346 WISKQEYDESGPSIVHRKCF 287
WISKQEYDESGPSIVHRKCF
Sbjct: 356 WISKQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 288 bits (706), Expect = 3e-78
Identities = 132/140 (94%), Positives = 138/140 (98%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 210 IEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYA 269
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 347
NTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 270 NTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 329
Query: 346 WISKQEYDESGPSIVHRKCF 287
WISKQEYDESGP+IVHRKCF
Sbjct: 330 WISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 258 bits (633), Expect = 2e-69
Identities = 117/142 (82%), Positives = 130/142 (91%)
Frame = -3
Query: 712 PPLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 533
P LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIRKDL
Sbjct: 8 PILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDL 67
Query: 532 YANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 353
Y+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQ
Sbjct: 68 YSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQ 127
Query: 352 QMWISKQEYDESGPSIVHRKCF 287
QMWI+K+EY E GP IVHRKCF
Sbjct: 128 QMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 99 bits (238), Expect = 2e-21
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 29/160 (18%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 527
L + Y LPDG+V+ + ERF PEALFQP + +E G+ E +N+I D+D R + Y
Sbjct: 240 LVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 299
Query: 526 NTVLSGGTTMYPGIADRMQKEITAL---------------------APST-----MKIKI 425
+ VLSGG+TMYPG+ R+++EI L P T K KI
Sbjct: 300 HIVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKI 359
Query: 424 -IAPP-ERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 314
I P RK+ V++GG++LA + W++++EY+E G
Sbjct: 360 RIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/65 (60%), Positives = 47/65 (72%)
Frame = -3
Query: 703 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYAN 524
E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+ + SI KCD+D+R +L+ N
Sbjct: 2282 EAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHN 2341
Query: 523 TVLSG 509
VLSG
Sbjct: 2342 IVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.4 bits (202), Expect = 4e-17
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 17/149 (11%)
Frame = -3
Query: 670 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 494
+ + ERF PE F P F + + E N I C +D+R+ LY N VLSGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 493 PGIADRMQKEIT----------------ALAPSTMKIKIIAPPERKYSVWIGGSILASLS 362
R+Q++I + P ++ ++I+ ++Y+VW GGS+LAS
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTP 315
Query: 361 TFQQMWISKQEYDESGPSIVHRKCF*THR 275
F + +K +YDE GPSI F HR
Sbjct: 316 EFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = -3
Query: 610 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 431
G A G+ + S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P +M++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 430 KII---APPERKYSVWIGGSILASL 365
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 52.4 bits (120), Expect = 4e-07
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = -3
Query: 574 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIA 419
+S++ C +D RK L N VL GGT M PG R+ +EI L S +K+
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQ 123
Query: 418 PP-ERKYSVWIGGSILASLSTFQQMWISKQEYDE 320
PP + W+GG+I SL +++ Y +
Sbjct: 124 PPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = -3
Query: 571 SIMKCDVDIRKDLYANTVLSGGTTMYPG 488
+I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 35.5 bits (78), Expect = 0.043
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -3
Query: 706 LEKSYELPDGQVITIGNERFRCPEALFQPSFL 611
L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 867 LTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 640 PEALFQPSFLGMEACGIHET 581
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 378 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRMS 551
+DPP+ +Y L+GG ++ + FCI G++V PP+ N+ + R++
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARIT 814
Query: 552 TS 557
S
Sbjct: 815 AS 816
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 360 PSNRCGSRNRSTTSLAPPLYTGSASK--RTARRCLQQPAAGC 241
P N+ G++ R +L P++TGS + RT + P+A C
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920
>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 704 REVLRTSRRSGHHYRKRKIPLPR--GSLPTLVLGYGSLRHPR 585
R++LR R HHYR+ + R G++P + Y + R PR
Sbjct: 521 RDLLRALRNKKHHYRELPDEVKRSLGTIPDEYVRYFTSRFPR 562
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 672 SSLSETKDSVAQRLSSNPRSWVWK 601
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 526 NTVLSGGTTMYPGIADRMQKEITALAP 446
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 393 GSVDRSSPPSLPSNRCGSRNRS----TTSLAPPLYTGSASKRTARRC 265
GS+ SP S P +R GSR R+ T+S A + +T ++C
Sbjct: 338 GSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKC 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,795,442
Number of Sequences: 59808
Number of extensions: 518812
Number of successful extensions: 1451
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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