Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0002
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_595| Best HMM Match : CH (HMM E-Value=0) 29 3.6
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 29 4.8
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.8
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 28 8.4
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -3
Query: 111 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
SWI RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 93 RTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 93 RTSAKAFAKGVFINQERKLEVRRRLDT 13
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 118 VKFLDRRKTNISESICQRCFHQSRTKV 38
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 118 VKFLDRRKTNISESICQRCFHQSRTKV 38
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 118 VKFLDRRKTNISESICQRCFHQSRTKV 38
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 118 VKFLDRRKTNISESICQRCFHQSRTKV 38
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = -1
Query: 587 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLXVAFVRRAVGAP 411
T + R ++++ R +WRASL AY K+VAVKKL V F VG P
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 115 KFLDRRKTNISESICQRCFHQSRTKV 38
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 35.1 bits (77), Expect = 0.055
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = -1
Query: 536 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLXVAFVRRAVGAP 411
R +WRASL AY K+VAVKKL V F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = -1
Query: 524 RASLXXXXXXXXXXXAYTKIVAVKKLXVAFVRRAVGAP 411
RASL AY K+VAVKKL V F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_595| Best HMM Match : CH (HMM E-Value=0)
Length = 905
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Frame = -3
Query: 690 RGSLRNGYHILGRQQA--RKLPTPGT 619
RG++++GY+ +QQA RK+P PG+
Sbjct: 333 RGTIQSGYYFCKQQQAARRKIPKPGS 358
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 226 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 381
+N + LAR+ + +F ++ AHLDT RR P D+ R RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 438 CNXELFNRNNFSIRYWSWNYRGCWH 512
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 179 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 69
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 375 ICSANVSVSPRMRCTDSAAHKCNXELFNRNNFSIRYW-SWNY 497
I S S R+RCT S + KC + + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -1
Query: 536 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLXVAFVRRAVGAP 411
R ASL AY K+VAVKKL V F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 658 RKAAGAQITHSRHGEVVTKNIDTGLLRGLVIG 563
R + + ++H HG T+N+ +G+ L G
Sbjct: 673 RSRSTSNLSHGNHGSTTTRNMSSGIQSNLAFG 704
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,743
Number of Sequences: 59808
Number of extensions: 418587
Number of successful extensions: 1117
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -