Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0001
(944 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 107 8e-24
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 107 8e-24
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 106 2e-23
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 103 2e-22
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 103 2e-22
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 93 3e-19
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 41 0.001
At3g22380.1 68416.m02825 expressed protein 29 4.5
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 28 7.8
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 107 bits (258), Expect = 8e-24
Identities = 49/76 (64%), Positives = 60/76 (78%)
Frame = +2
Query: 455 SEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEM 634
++ L++L GL RKPMAL+KKLR+AK+EAP EKPE V+THLRNMIIVPEM
Sbjct: 37 TDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEM 96
Query: 635 VGSIVGIYNGKTFNQV 682
+GSI+G+YNGKTFNQV
Sbjct: 97 IGSIIGVYNGKTFNQV 112
Score = 37.1 bits (82), Expect = 0.017
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 177 KKRIFRKFTYRGVDLDQLLDM 239
KKR F+KF ++GVDLD LLDM
Sbjct: 15 KKRTFKKFAFKGVDLDALLDM 35
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 107 bits (258), Expect = 8e-24
Identities = 49/76 (64%), Positives = 60/76 (78%)
Frame = +2
Query: 455 SEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEM 634
++ L++L GL RKPMAL+KKLR+AK+EAP EKPE V+THLRNMIIVPEM
Sbjct: 37 TDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEM 96
Query: 635 VGSIVGIYNGKTFNQV 682
+GSI+G+YNGKTFNQV
Sbjct: 97 IGSIIGVYNGKTFNQV 112
Score = 37.1 bits (82), Expect = 0.017
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 177 KKRIFRKFTYRGVDLDQLLDM 239
KKR F+KF ++GVDLD LLDM
Sbjct: 15 KKRTFKKFAFKGVDLDALLDM 35
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 106 bits (255), Expect = 2e-23
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +2
Query: 455 SEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEM 634
++ L+EL GL RKPMAL+KKLR+AK +AP EKPE+V+THLRNM+I+PEM
Sbjct: 37 TDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEM 96
Query: 635 VGSIVGIYNGKTFNQV 682
+GSI+G+YNGKTFNQ+
Sbjct: 97 IGSIIGVYNGKTFNQI 112
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 171 LKKKRIFRKFTYRGVDLDQLLDMP 242
L KKR F+KF+++GVDLD LLDMP
Sbjct: 13 LAKKRTFKKFSFKGVDLDALLDMP 36
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 103 bits (247), Expect = 2e-22
Identities = 46/58 (79%), Positives = 52/58 (89%)
Frame = +2
Query: 509 GLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQV 682
GL RKPMAL+KKLR+AK EAP EKP V+THLRNMIIVPEM+GSI+G+YNGKTFNQV
Sbjct: 52 GLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQV 109
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 177 KKRIFRKFTYRGVDLDQLLDM 239
KKR F+KF++RGVDLD LLDM
Sbjct: 12 KKRTFKKFSFRGVDLDALLDM 32
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 103 bits (247), Expect = 2e-22
Identities = 47/76 (61%), Positives = 58/76 (76%)
Frame = +2
Query: 455 SEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEM 634
++ L++L GL RKPMAL+KKLR+AK EAP EKP V+THLRNMIIVPEM
Sbjct: 35 TDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEM 94
Query: 635 VGSIVGIYNGKTFNQV 682
+GS++G+YNGKTFNQV
Sbjct: 95 IGSVIGVYNGKTFNQV 110
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 177 KKRIFRKFTYRGVDLDQLLDM 239
KKR F+KF++RGVDLD LLDM
Sbjct: 13 KKRTFKKFSFRGVDLDALLDM 33
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 92.7 bits (220), Expect = 3e-19
Identities = 41/60 (68%), Positives = 52/60 (86%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 GLKRKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQV 682
GLK++P+ L+KKLRRAKKEA K PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++
Sbjct: 57 GLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEI 116
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 177 KKRIFRKFTYRGVDLDQLLDM 239
KKR F+KF++RG ++D LL M
Sbjct: 17 KKRTFKKFSFRGFNVDALLKM 37
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3
Query: 177 KKRIFRKFTYRGVDLDQLLDM 239
KKRIF+KF++RGVDLD LLDM
Sbjct: 12 KKRIFKKFSFRGVDLDALLDM 32
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 509 GLKRKPMALVKKLRRAKK 562
G RKPMAL+KKLR+A K
Sbjct: 52 GFTRKPMALIKKLRKAVK 69
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 541 EAASRQERGSSE*EARDREDSLEKHDHRSRD---GRFNCRHLQRK 666
EAA ++RG S + RDRE ++ R RD R N R +R+
Sbjct: 43 EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 608 RNMIIVPEMVGSIVGIYNGKT 670
R I+PE V S V IYNGKT
Sbjct: 161 RRSTILPEYVDSAVRIYNGKT 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,620
Number of Sequences: 28952
Number of extensions: 325176
Number of successful extensions: 695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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