Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6432
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   0.69 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   2.8  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   6.4  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   6.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.4  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   8.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 218 YAAMWL*FTDGHGRRQRLTIRWTLQRPTRAIYRYQIVL 105
           Y A WL       R +RL  +  LQRPT+ + RY + L
Sbjct: 586 YFARWLAACRSDPRCRRLDFQHFLQRPTQRLQRYTLEL 623


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 467 YNGCPTLQAETHYCFTAENRRGD 399
           Y  CP L +   +CF+A + + D
Sbjct: 517 YPACPLLTSRVRFCFSASHNKAD 539


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 118 YLYMALVGRCRVHLMV 165
           YLY  ++GRC  HL V
Sbjct: 65  YLYWVILGRCSAHLHV 80


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 224 GVLSVYLFLEIHSYLTNYV 280
           GVLS YLFL I  Y+  Y+
Sbjct: 269 GVLSSYLFLFIGFYINTYI 287


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 342 IICVITGGRTSCESAWLSTITPPIFCSEA 428
           I C+   G+  C SA++S  T PIF SE+
Sbjct: 162 IRCIWRKGK-KCHSAYISERTKPIFRSES 189


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 371 LL*VRMVKYHHPAYFLQ*SSNAFRLEGWGSRC-NYTETLEL 490
           L+  R+ K+ +P Y L  +SN F      ++C  Y E LEL
Sbjct: 256 LILARLNKFSYPNYVLSRTSNVFNCR---AQCLEYVEVLEL 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,614
Number of Sequences: 5004
Number of extensions: 56273
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)