Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6432
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    28   5.0  
03_05_0821 - 27960414-27961253                                         28   6.6  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    27   8.7  

>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 460 AAPPFKPKRITASLQKIGGVMVLNHADSQEVLPPVITQIII 338
           A PP +P +   S +K G +++   A ++ ++ PV+   +I
Sbjct: 225 APPPRRPVKADTSKEKKGPILIDKFASNKPIVDPVVAAALI 265


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 175 RLPWPSVNYSHIAAYRWGTLRIPLFRNTFVLNKLCSRLTSTVKE*HRVIKI 327
           R  W  V++  +A++RW   R P    +F    +C+ L +      RV+ +
Sbjct: 9   RARWALVDHPAVASFRWEPGRTPASTPSFAAAVICAYLATVFLLHRRVVPL 59


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 133 LVGRCRVHLMVSRCRLPWPSVNYSHIAAYRWGTLRIPLFRNTFVL 267
           L+ RC   +   RC   +P + Y    AY W T+ + ++   +++
Sbjct: 61  LIDRC---MCADRCVRSYPDIGYLAFGAYGWTTIGLVMYVELYLV 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936,700
Number of Sequences: 37544
Number of extensions: 422020
Number of successful extensions: 925
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)